Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00678 ATGCCAACAGAGATTGCAATGAACAACAGAAGGtatgaagtgtttatgagcttcagaggagaagatactcgtgctactttcacttcacatctctatgccgctcttcaaaatgccggaatcattgttttcaaggatgacgagtcacttccaaggggagatcagatctcagactcactcctgctagcaatcgaacaatctcaaatttctgttgttgttttctcaacaaattacgcagattcgcggtggtgtctgcaagagttagagaaaataatgaattgtaaaagaactatagggcaggtggttctgccagtgttctatgatgtcgatccctctcaagtacgctatcaaactggccactttggagaatcatttcaaaacCTTTCCAACAGGATTTTAAAAGATGATGACGAGAAAGCGGTCGGAGAGGGCGAATCTGATAAGGAATATATGATGAGCAGGGTTTTGATCAGTCGTTGGAGGAAGGTACTTCGTGAGGCTGCTAGCATCGCAGGGGTTGTAGTTCTAAATTCCAGGAATGAAAGTGAGACTATAAAAAACATTGTTGAAAATGTTACACGTTTGTTGGACAAGATAGAGTTGCCTCTTGTCGATAATCCCGTGGGAGTAGAATCTCGAGTGCAAGACATGATTGAGCGACTAGACCTAAACCACAAACAATCAAATtcaaatgatgttttgctattaggaatatggggaatgggaggcattggtaaaacaaccattgcaaaagccatttacaataagattggtcgcaattttgagggaaggagctttcttgaacaaattggggaactttggaggcaagacgcaattcgtttccaagaacaacttctatttgatatctacaaaacgaaaagaaagatacataatgttgaattaggaaaacaagctttgaaggaaagactttgcagtaaaagggtatttcttgtacttgatgatgtgaatgatgtggagcaattgagtgctttatgtggaagtcgcgaatggtttggttcagggagtagaataatcatcacaactagagataagcatattcttagaggggatagagttgacaaaatgtacacaatgaaagaaatggatgaaagtgagtctattgagctttttagttggcatgcattcaagcaagcaagtccaagagaaggttttactgaactttcaaatgatgtaattgaatattctgggggtttgccattagctcttacagtccttggttgccatttgtttgatatgaagataatagaatggaagactgtattagacaaacttaagagaattcctcatgatcaagtacaaaagaagttaaaaataagctatgatggtttaagtgatgatacagagagagacatattccttgatatagcttgtttctttattggaatggatcggaatgatgctatgtgtatcttaaatggttgtggacttttcgcagaaaatggaatacgtgttcttgtagagcgaagtcttgtaactgttgatgataagaacaagcttggaatgcatgatttgctacgagacatgggaagagaaatcattcgtgcaaaatcaccaaaggatcttgaggagcgtagcaggttatggtttaatgaggatgtgcttgatgtattagcaaaaaaaactggaacgaaaaccattgagggtctggctttgaagttaccattaaccaattcaaattgttttagcactgaagcatttaaggagatgaagaaactcagattgcttcaacttgccggcgtacaacttgatggagattttgaatatctttccaaagatcttagatggctttgttggaatggatttcctttaaaatgcatacccaaaaactttcatcaaggaagtctagttTCCATTGAGTTAGAAAATAGTAATGTTAAACTTGTGTGGAAAGAGGCCCAGttgatggagaaattgaaaattctcaatcttagtcattctcataatttaacacagaccccagacttttcaaatttgcctaatctggaaaagctagtgctgatagattgtccaaggttgtttgaggtctcccataccgttggacatctcaataaaattcttatgataaatttgaaagattgtattagccttcatagccttccaagaagcatctacaagttgaaatctcttaaaacactcattctctctggatgtttgaagattgacaagttggaagaggacttggaacaaatggagtctttgatgacccttattgcagataacactgcaataacaaaagttcccttttcaatagttacatcaaaaaGCATTGGATACATTTCTATGTGCGGCTATGAAGGATTCTCATGTGATGTGTTTCCTTCTATTATTTTGTCTTGGATGTCACCAATGAGTAGTCTCTCGTCCCACATTCAAACATTTGCAGGCATGCCATCTCCTATTTCTTTACATGTGGCTAATAATAGTTCCCATAATCTATTATCTATTTTTGAGGACCTTCCAAAGCTTCGAAGTCTTTGGGTAGAGTGTGGAACTAAACGTCAACTATCTCAAGAAACAACAATCATTTTAGATGCTTTATATGCCATAAATTCTAAAGCATTGGAATCAGTTGCAACAACATCACAATTACCAAATGTGAATGCTTCAACTTTAATTGAATGCGGCAATCAAGTGCACATTTCAGGATCAAAAGATTCCTTGACATCTCTTTTAATTCAAATGGGAATGAGTTGCCAAATCGCTCATATTCTTAAACATAAAATTTTACAGAATATGAATACTAGTGAGAATGGTGGTTGTTTGCTCCCGGGTGATCGTTATCCAGATTGGTGGACTTTCCACAGTGAAGATTCTTCTGTGATTTTTGAAATCCCTCAAGTGAACAAACGTAACTTGAAGACAATGATGTGCCATGTCCATTATTCTTCCCCAGTCAATATAGCAACAGATGGCTTGAAAAATTTGTTGGTGATAAATCACACAAAGACCACCATTCAGCTTTACAAGAGTGATGCATTAGCTTCCTTAGAAGACGAGGAGTGGCAAAGGGTATTATCAAATATAGAGCCTGGTAACAAAGTGGAAATAATTGTTGTTTTTGGGAGCAGGTTAACTATTGTTAACAAGACCACGATTTATCTCATATATGAGCCAATGAATGAAAAAATGGAGCACTGCCATGCGCCAAATAAGAATGTAATTGTTTTTAATGGTGATGAAAATGTATGTAATGACAGGTCAATCTCTCAAGTGAAATTCAAGGATGACGTAGGGTGTGTTTCTGTAAAAAGAGTAATTAAGTGCTTATTGAATAAGTGCTTATCATGTAAAAGCTTTACTGCAAAATCAGAAAAGATGAAAAGTCGAGTGAGGTTAAAAGGCGGTGAAAGAATGTTAGGTCAAACTTGA 3387 0.1662 MPTEIAMNNRRYEVFMSFRGEDTRATFTSHLYAALQNAGIIVFKDDESLPRGDQISDSLLLAIEQSQISVVVFSTNYADSRWCLQELEKIMNCKRTIGQVVLPVFYDVDPSQVRYQTGHFGESFQNLSNRILKDDDEKAVGEGESDKEYMMSRVLISRWRKVLREAASIAGVVVLNSRNESETIKNIVENVTRLLDKIELPLVDNPVGVESRVQDMIERLDLNHKQSNSNDVLLLGIWGMGGIGKTTIAKAIYNKIGRNFEGRSFLEQIGELWRQDAIRFQEQLLFDIYKTKRKIHNVELGKQALKERLCSKRVFLVLDDVNDVEQLSALCGSREWFGSGSRIIITTRDKHILRGDRVDKMYTMKEMDESESIELFSWHAFKQASPREGFTELSNDVIEYSGGLPLALTVLGCHLFDMKIIEWKTVLDKLKRIPHDQVQKKLKISYDGLSDDTERDIFLDIACFFIGMDRNDAMCILNGCGLFAENGIRVLVERSLVTVDDKNKLGMHDLLRDMGREIIRAKSPKDLEERSRLWFNEDVLDVLAKKTGTKTIEGLALKLPLTNSNCFSTEAFKEMKKLRLLQLAGVQLDGDFEYLSKDLRWLCWNGFPLKCIPKNFHQGSLVSIELENSNVKLVWKEAQLMEKLKILNLSHSHNLTQTPDFSNLPNLEKLVLIDCPRLFEVSHTVGHLNKILMINLKDCISLHSLPRSIYKLKSLKTLILSGCLKIDKLEEDLEQMESLMTLIADNTAITKVPFSIVTSKSIGYISMCGYEGFSCDVFPSIILSWMSPMSSLSSHIQTFAGMPSPISLHVANNSSHNLLSIFEDLPKLRSLWVECGTKRQLSQETTIILDALYAINSKALESVATTSQLPNVNASTLIECGNQVHISGSKDSLTSLLIQMGMSCQIAHILKHKILQNMNTSENGGCLLPGDRYPDWWTFHSEDSSVIFEIPQVNKRNLKTMMCHVHYSSPVNIATDGLKNLLVINHTKTTIQLYKSDALASLEDEEWQRVLSNIEPGNKVEIIVVFGSRLTIVNKTTIYLIYEPMNEKMEHCHAPNKNVIVFNGDENVCNDRSISQVKFKDDVGCVSVKRVIKCLLNKCLSCKSFTAKSEKMKSRVRLKGGERMLGQT 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00678 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 461 IPR027417 -
Gma03g00678 1128 Gene3D - 199 359 IPR027417 -
Gma03g00678 1128 PRINTS Disease resistance protein signature 234 249 - -
Gma03g00678 1128 PRINTS Disease resistance protein signature 308 322 - -
Gma03g00678 1128 PRINTS Disease resistance protein signature 401 415 - -
Gma03g00678 1128 PRINTS Disease resistance protein signature 639 655 - -
Gma03g00678 1128 SMART till_3 11 169 IPR000157 GO:0007165
Gma03g00678 1128 Gene3D - 366 450 IPR042197 -
Gma03g00678 1128 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 171 IPR035897 -
Gma03g00678 1128 Gene3D Ribonuclease Inhibitor 498 883 IPR032675 -
Gma03g00678 1128 SUPERFAMILY L domain-like 507 834 - -
Gma03g00678 1128 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 20 1039 - -
Gma03g00678 1128 Gene3D - 6 198 IPR035897 -
Gma03g00678 1128 ProSiteProfiles TIR domain profile. 10 195 IPR000157 GO:0007165
Gma03g00678 1128 Coils Coil 726 746 - -
Gma03g00678 1128 Pfam NB-ARC domain 215 446 IPR002182 GO:0043531
Gma03g00678 1128 Pfam TIR domain 12 131 IPR000157 GO:0007165
Gma03g00678 1128 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 1039 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00678 Gma-Chr3 21530167 21539937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00678 8 756 WRKY Transcription Factor Family AT4G12020 30.401 5.52e-82 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00678 - - gmx:100808753 2234.53