Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00657 ATGTCAAGTCTACAGATGTGTCATGTGGTAGATTTGGAGCAAGGGAGTCTCAGTCACCACCACCGTTCAGTGAGTGGCAGTGACATGAGCATGTGCTTTTCTGATGCTGAGAATGGTTCATGCTATTCCCATTTCTATTCAACAAATGGTGACCCTTATGATGATTACACATTTGGTTGTGTTTCTGATGCTGAGGATGGTGGTGATGTTGATTCAAGGAGGGCTTCTTCTGTCACTGATTCTGTGGAGGTGGAAATTGAAAGTGGTGCTCCTGAAATTAAGGTGCATTTAGCCAAAGTGGAGAGGGATTGCAGGATTTGTCATCTTGGTTTGGAGAGTGATGATAGTCAAGAAGAGTCCGGAGTTCCCATTGAATTGGGGTGTTCTTGTAAGGATGATTTGGGTGCTGCTCACAAGAATTGTGCTGAGGCCTGGTTCAAGATTAAGGGGAATAGGACATGTGAAATATGTCATTCTGTTGCACGGAATGTTTGTGGGGCAAATGAGGAGACAACACAGACTTTGAGTGACAGCAGCAATGCTAATAATGCAGCATCCACAATCTCAACATCAACAGAACCTCGAAGATTTTGGCAAGGCCATCGCTTCCTGAATTTTCTGCTTGCTTGTATAGTTTTTGCATTTGTCATATCGTGGCTTTTTCATTTCAATATGCCCTCCTCGTAA 687 0.4352 MSSLQMCHVVDLEQGSLSHHHRSVSGSDMSMCFSDAENGSCYSHFYSTNGDPYDDYTFGCVSDAEDGGDVDSRRASSVTDSVEVEIESGAPEIKVHLAKVERDCRICHLGLESDDSQEESGVPIELGCSCKDDLGAAHKNCAEAWFKIKGNRTCEICHSVARNVCGANEETTQTLSDSSNANNAASTISTSTEPRRFWQGHRFLNFLLACIVFAFVISWLFHFNMPSS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00657 228 ProSiteProfiles Zinc finger RING-CH-type profile. 96 164 IPR011016 GO:0008270
Gma03g00657 228 Pfam RING-variant domain 104 157 IPR011016 GO:0008270
Gma03g00657 228 PANTHER OS01G0850200 PROTEIN 6 227 - -
Gma03g00657 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 168 IPR013083 -
Gma03g00657 228 PANTHER ZINC FINGER, RING-CH-TYPE 6 227 - -
Gma03g00657 228 CDD RING_CH-C4HC3_MARCH 104 158 - -
Gma03g00657 228 SUPERFAMILY RING/U-box 101 161 - -
Gma03g00657 228 SMART ringv_2 103 158 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00657 Gma-Chr3 20389571 20393148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00657 49 228 C3H Transcription Factor Family AT5G05830 53.763 6.94e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00657 - - gmx:100813946 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00657 03 20389571 20393148 Gma11g02278 11 38165906 38167199 ECH
Gma03g00657 03 20389571 20393148 Gma02g02389 02 49959951 49965007 ECH
Gma03g00657 03 20389571 20393148 Gma14g00537 14 5155896 5160740 ECH
Gma03g00657 03 20389571 20393148 Gma03g00657 03 20389571 20393148 ECH