Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00646 ATGGAGTTTGATCCAAGTTTCCAAGGGCCACAATACCTTTCAAGTCTTTTCCCTAGAAACTCCTACTTGAAGCCACTAACTCAAACCATATTTCCATCACAAAGCTCCATTTTCACTCCACCTCCACCATCATCCGTCATGTTTCACCCTAACAACAATTCCCACCATTTTCAAGACCACATCATGAATGTGCCTACCAACAACACTCCCTTTGTGATGGAAGGTCCTTCTAACCCCATCACCACCCCTATGTATGGGATAACGACCCCTTCTTTAGGCGATGGGTCTTCCCTGGGAGGCTTTGTCAATGTTCAATGTCACCCCCCTATGATGTTGGCACCAAAAAACAATAACAAAATGGAGGCCTTGTATGGCCAGGACAAAGGCAAAGCCATATCAGATTTTTCACAAAAAACCATGCTTTGTTTATCTGAAGATTCTTCTTCCAAGTCGCCATCACCCGTTTCTCTCCCTAATGATTGGTGGATGAGTCAATATCATTGGGACACTGATCAAAAGGTAAAGGTGGAAAAGGATTCCAACATTGGTAATGATAATGTAATCAAAGGGAAGTGGAGTATGAAAGAAGACAGGGATCTCATAGAATTAGTGAATCAATATGGGTTGAAGAAATGGTCAAAAATTGCAAAGTTATTACATTGTAGGACCGGGAAGCAGTGTCAGGAAAGATGGAACAACCATCTCCAACCAAATATTAGGAAGGACTCATGGACCCTAAAGGAAGATAAAATTTTCATCGAAACCCACATCAAAGTAGGAAACAAGTGGTCAGAGATTGCTAAGAGGTTGCCTGGTAGGGCTCCAAACACCATCAAGAACCGTTGGAATGGCAGCAAGCGGCGCAAGAATGACAAGAGGCAGAACAAGAACAAGCATGGCCCTTATGATGGGTCAGTGCTTGATGCTTATGTTAAAATGGTCACTGCTACTGAGGAAACTACATAA 966 0.4275 MEFDPSFQGPQYLSSLFPRNSYLKPLTQTIFPSQSSIFTPPPPSSVMFHPNNNSHHFQDHIMNVPTNNTPFVMEGPSNPITTPMYGITTPSLGDGSSLGGFVNVQCHPPMMLAPKNNNKMEALYGQDKGKAISDFSQKTMLCLSEDSSSKSPSPVSLPNDWWMSQYHWDTDQKVKVEKDSNIGNDNVIKGKWSMKEDRDLIELVNQYGLKKWSKIAKLLHCRTGKQCQERWNNHLQPNIRKDSWTLKEDKIFIETHIKVGNKWSEIAKRLPGRAPNTIKNRWNGSKRRKNDKRQNKNKHGPYDGSVLDAYVKMVTATEETT 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00646 321 CDD SANT 191 235 IPR001005 -
Gma03g00646 321 SMART sant 240 288 IPR001005 -
Gma03g00646 321 SMART sant 188 237 IPR001005 -
Gma03g00646 321 Gene3D - 243 301 - -
Gma03g00646 321 PANTHER MYB PROTEIN-RELATED 170 294 - -
Gma03g00646 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 239 IPR017930 -
Gma03g00646 321 ProSiteProfiles Myb-like domain profile. 184 235 IPR001005 -
Gma03g00646 321 CDD SANT 243 283 IPR001005 -
Gma03g00646 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 290 IPR017930 -
Gma03g00646 321 Pfam Myb-like DNA-binding domain 192 250 - -
Gma03g00646 321 MobiDBLite consensus disorder prediction 271 304 - -
Gma03g00646 321 PANTHER TRANSCRIPTION FACTOR MYB98 170 294 - -
Gma03g00646 321 SUPERFAMILY Homeodomain-like 186 282 IPR009057 -
Gma03g00646 321 ProSiteProfiles Myb-like domain profile. 236 283 IPR001005 -
Gma03g00646 321 Gene3D - 188 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00646 Gma-Chr3 20154276 20156477 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00646 187 312 MYB Transcription Factor Family AT4G18770 53.968 4.53e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma03g00646 Myb_DNA-bind_6 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00646 K09422 - gmx:102666249 667.537