Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00573 ATGGAACAGGGTCAATGTTGGACAAAGAAGAAGAAGTACTCTTTGAACAGCACTAGTCTTGGTTCACCAACAAACCCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGCCGTCATGACCTTGAAACTCAGCTTCATAATAAGCCAGTTCATCAAAGTTCTTTTGCTTCTTTGGGTGGTTACCTATACCCCTCTCCTGTTTGTGGATTGGCTTATAAAAAACCTAACCCTAATTCTGATCCTGATTTTGTTGCTTCACCTTCTTCATCACCCTCACTTTCCAAGGCCTTATTGGCTCCATCAGTGAATATTGGTACCTTCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACGAGATTTCTCCTGCGAGTAATAATTCTTCTGAATCATGGCCAAATTCAGCTGAAGATCATAGATTATATTCATGTAAGTTCTACCCTCAAGCTGATACAAAGAAAGCCTCCAAGGAAATAATGGATTCTAGATATAGGGATAATAAGGGGAATAATGATGATATTGATGGGGATATGAGCTTGAATTCAGTTGTGTATAGAACATACCCATCTTTGCAGTTTGAGAGTACTAAAGAGCCAGATCATATCAGTTGCAAGAAAAGGAAAACAGATGCTTCCTCAACTCTATTTTCCTCACAGTCAAGCTCAGTTGATAGGCATCACGTGAAACCAAAGATGTTTGAGTTTAGCCCTAGCTCAATAGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG 957 0.4117 MEQGQCWTKKKKYSLNSTSLGSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCRHDLETQLHNKPVHQSSFASLGGYLYPSPVCGLAYKKPNPNSDPDFVASPSSSPSLSKALLAPSVNIGTFREETMIPLYDSSILHEISPASNNSSESWPNSAEDHRLYSCKFYPQADTKKASKEIMDSRYRDNKGNNDDIDGDMSLNSVVYRTYPSLQFESTKEPDHISCKKRKTDASSTLFSSQSSSVDRHHVKPKMFEFSPSSIEELDLELRLGNRSKV 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00573 318 MobiDBLite consensus disorder prediction 262 286 - -
Gma03g00573 318 Pfam C2H2-type zinc finger 55 79 - -
Gma03g00573 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Gma03g00573 318 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 318 - -
Gma03g00573 318 Gene3D Classic Zinc Finger 52 110 - -
Gma03g00573 318 PANTHER OS07G0101800 PROTEIN 1 318 - -
Gma03g00573 318 MobiDBLite consensus disorder prediction 272 286 - -
Gma03g00573 318 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Gma03g00573 318 SMART c2h2final6 55 77 IPR013087 -
Gma03g00573 318 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00573 Gma-Chr3 16183570 16185249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00573 33 91 C2H2 Transcription Factor Family AT5G06070 76.667 3.24e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g00573 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00573 - - gmx:100804148 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00573 03 16183570 16185249 Gma02g02363 02 49699357 49700217 ECH
Gma03g00573 03 16183570 16185249 Gma14g00571 14 5467698 5468531 ECH
Gma03g00573 03 16183570 16185249 Gma03g00573 03 16183570 16185249 ECH