Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00544 ATGGGTGCTTGTTGGAGCAGTAGGATTAAGTCTGTTAGTCCTTCCAATACAGGGTTCACTTCTAGAAGCGTCAGCAGAGATGGCTACGATATCCACTCGAATAGCAGGAACTCATCAGCCTCCATCCCCATGACCCCTCGGAGTGAGGGCGAGATCTTACAATCTTCGAATTTGAAAAGCTACAGCTACAATGAGCTAAAAATGGCCACAAAAAATTTCTGCCCAGACAGTGTCTTAGGAGAGGGTGGATTTGGTTCAGTTTTCAAGGGCTGGATTGATGAACATTCGCTCGCTGTTACCAGAGCCGGAACAGGCATGGTTGTTGCTGTGAAGAAACTTAATCAAGAGAGTTTCCAGGGTCACAAGGAATGGTTGGCTGAAATCAACTATCTTGGGCAACTGCAGCATCCTAATCTTGTCAAGTTGATAGGCTACTGCTTAGAGGATCAGCACCGGCTTCTAGTTTATGAGTATATGCCCAAAGGAAGTGTGGAGAATCATCTGTTCAGAAGAGGATCTCATTTTCAGCAGCTTTCTTGGACTTTGAGATTGAAAATATCCCTTGGGGCTGCAAGGGGTCTTGCTTTTCTCCATAGCACAGAAACTATAGTCATATACCGCGACTTTAAGACTTCCAATATCCTGCTTGATACTAACTATAATGCAAAACTTTCTGATTTTGGGCTGGCCAGAGATGGACCAACTGGTGATAAGAGCCATGTTTCTACTAGGGTCATGGGAACCCATGGATATGCAGCACCAGAGTATCTAGCAACAGGTCACCTCACTGCCAAGAGTGATGTCTATAGTTTTGGAGTAGTTCTTTTGGAAATGTTGTCTGGAAGACGCGCCATAGACAAGAACCGGCCATCCGGAGAGCAATGCCTTGTTGAATGGGCAAAGCCTTACCTTTCTAACAAACGCAGAGTTTTTCGCGTGATGGATAGTCGTCTTGAAGGCCAGTATTCCCTTACACAAGCTCAAAGGGCAGCCACCCTTGCTTTTCAATGTCTTGCTGTAGAGCCCAAATACAGGCCAAATATGGATGAGGTGGTGAGAGCATTGGAGCAGCTACGCGAATCAAATAATGATCAGGCCCTCTGCTTCTCTCCTTTATTAAGCAATGCTACACCAAAACTCAGTGAGCATAAAGTTAGGCAGTGTGTTGATACAAGACTAGGAGGATAA 1188 0.4529 MGACWSSRIKSVSPSNTGFTSRSVSRDGYDIHSNSRNSSASIPMTPRSEGEILQSSNLKSYSYNELKMATKNFCPDSVLGEGGFGSVFKGWIDEHSLAVTRAGTGMVVAVKKLNQESFQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDQHRLLVYEYMPKGSVENHLFRRGSHFQQLSWTLRLKISLGAARGLAFLHSTETIVIYRDFKTSNILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEQCLVEWAKPYLSNKRRVFRVMDSRLEGQYSLTQAQRAATLAFQCLAVEPKYRPNMDEVVRALEQLRESNNDQALCFSPLLSNATPKLSEHKVRQCVDTRLGG 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00544 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Gma03g00544 395 SUPERFAMILY Protein kinase-like (PK-like) 39 355 IPR011009 -
Gma03g00544 395 Pfam Protein kinase domain 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g00544 395 ProSitePatterns Protein kinases ATP-binding region signature. 79 112 IPR017441 GO:0005524
Gma03g00544 395 MobiDBLite consensus disorder prediction 8 49 - -
Gma03g00544 395 Gene3D Transferase(Phosphotransferase) domain 1 159 371 - -
Gma03g00544 395 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Gma03g00544 395 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g00544 395 CDD STKc_IRAK 79 358 - -
Gma03g00544 395 PANTHER OS01G0588500 PROTEIN-RELATED 22 362 - -
Gma03g00544 395 MobiDBLite consensus disorder prediction 1 49 - -
Gma03g00544 395 PANTHER KINASE 1B 22 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00544 Gma-Chr3 11543278 11547036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00544 36 355 Glycoside Hydrolase AT3G07070 47.432 4.83e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma03g00544 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00544 - - gmx:100818744 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00544 03 11543278 11547036 Gma03g00544 03 11543278 11547036 ECH