Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00526 ATGAAGCACTTGGTTCCTTTGTGCTATGGTCATTGGACAACATTGTTGCAGACCTTGCCAGTCATCAAGGAGTTGTTAAGGGATATAAGTAGGCAGTCCAGCAATCATCATCGAAATCTTAGGATTCTCTGGGCATTTTGTGTTTATCTTGAAGCTGTTTCTGTTCTCCCTCAGCTGCGGGTCATGCAGAACACTAAGATTGTTGAACCATTCATAGCACACTATATTTTTGCTCTTGGAGTTGCAAGGTTCTTGAGTTGTGCACAATGGGTCCTCCAGGTGTTTTCTTTTGATGTTGTGGATTTTGATGGTGGAGAAATTTGGGCAACTTGCTTCAATGTTGTGGCTGATCAGTTCTACAATGTTATTGAAGCTGGTAAGAACATCAATCATGAGAAAAATGGCACTGAAGTTCAGAAGAGAACTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAGTTAACTCTATGGGGAAATTTTTGCATTGTAGAAGGACAAAGGTTGCAAACTATTTGTCATGTTGGGGAATTTCTAGTTTTGGCTACAAAAGTTGTCATATTAAATGATTTCAATGGGAAGTCTGTCGGGACTATAACCACTAGTCAGCTATATGTGGAGGCTGATTTTCCCGAGGCTTGTACACTGAAAAGATGGTTTGAAAATGAAGGGAAGAGTGTCCCAACTCTCTCTATTTCTAGAGAAATGTCTAATTTGGGTAAGACTGATGTGTGGAAGACTATATCTCAAATTAAAGATGAGAAGTTAGGGACTTTAGAGAAGCCTGATTGGATATTTGTCTTTGTAGTTGTTTCACACATTAAGGTTGATAACTTCTGTTACCCAGGGTGCCCTCTCAGATAG 864 0.4016 MKHLVPLCYGHWTTLLQTLPVIKELLRDISRQSSNHHRNLRILWAFCVYLEAVSVLPQLRVMQNTKIVEPFIAHYIFALGVARFLSCAQWVLQVFSFDVVDFDGGEIWATCFNVVADQFYNVIEAGKNINHEKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQRLQTICHVGEFLVLATKVVILNDFNGKSVGTITTSQLYVEADFPEACTLKRWFENEGKSVPTLSISREMSNLGKTDVWKTISQIKDEKLGTLEKPDWIFVFVVVSHIKVDNFCYPGCPLR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00526 287 Gene3D - 113 231 IPR012340 -
Gma03g00526 287 Pfam ER lumen protein retaining receptor 35 92 IPR000133 GO:0006621|GO:0016021|GO:0046923
Gma03g00526 287 PANTHER REPLICATION PROTEIN A SUBUNIT 93 127 - -
Gma03g00526 287 CDD RPA1_DBD_B 127 221 - -
Gma03g00526 287 Pfam Replication protein A OB domain 127 206 IPR031657 -
Gma03g00526 287 Gene3D - 232 286 IPR012340 -
Gma03g00526 287 PANTHER REPLICATION PROTEIN A SUBUNIT 132 286 - -
Gma03g00526 287 PRINTS ER lumen protein retaining receptor signature 80 98 IPR000133 GO:0006621|GO:0016021|GO:0046923
Gma03g00526 287 PRINTS ER lumen protein retaining receptor signature 66 80 IPR000133 GO:0006621|GO:0016021|GO:0046923
Gma03g00526 287 PRINTS ER lumen protein retaining receptor signature 44 64 IPR000133 GO:0006621|GO:0016021|GO:0046923
Gma03g00526 287 SUPERFAMILY Nucleic acid-binding proteins 127 227 IPR012340 -
Gma03g00526 287 PANTHER REPLICATION FACTOR A 1, RFA1 93 127 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma03g00526 287 SUPERFAMILY Nucleic acid-binding proteins 245 286 IPR012340 -
Gma03g00526 287 PANTHER REPLICATION FACTOR A 1, RFA1 132 286 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00526 Gma-Chr3 10224016 10226821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00526 133 286 Core DNA Replication Machinery Family AT4G19130 63.636 8.15e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00526 K07466 - gmx:100778597 286.574