Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00489 ATGAAGAATGCAAAGGGCAAGGGAGCAGCAAGGGCCTCAAAAGAATCACTGAAGCCCGTTGATGACCGAAAGGTTGGAAAGCGGAAGGCTTCCGGTAAGCCTGGGAGAAGTAGTGCACCAAAGAAGGAGAAGAAGGCCAAGAAAGACCCCAACAAGCCTAAAAGACCACCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGGAAGACCTTTAAGGCTGAGAATCCTAATGTGAAGGCTGTATCAGTTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCTTGTCCAGTGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCGAAAAGGAAAGCTGAGTATGAAAAACTTATCAAAGCTTATGATAAAAAGCAGGCAAGCTCCGCAGATGATGAAGAATCAGACAAGTCCAAATCTGAAGTGAATGATGAAGATGATGCCAGTGGAGAGgaggaggaagaggatgatgaggaggaagaggacgatgaAGATGATGACTGA 501 0.4251 MKNAKGKGAARASKESLKPVDDRKVGKRKASGKPGRSSAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYDKKQASSADDEESDKSKSEVNDEDDASGEEEEEDDEEEEDDEDDD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00489 166 MobiDBLite consensus disorder prediction 1 57 - -
Gma03g00489 166 MobiDBLite consensus disorder prediction 121 143 - -
Gma03g00489 166 SMART hmgende2 52 123 IPR009071 -
Gma03g00489 166 Gene3D High mobility group box domain 36 138 IPR036910 -
Gma03g00489 166 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 161 IPR031061 -
Gma03g00489 166 Pfam HMG (high mobility group) box 53 121 IPR009071 -
Gma03g00489 166 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 53 122 IPR009071 -
Gma03g00489 166 MobiDBLite consensus disorder prediction 144 166 - -
Gma03g00489 166 MobiDBLite consensus disorder prediction 121 166 - -
Gma03g00489 166 MobiDBLite consensus disorder prediction 36 54 - -
Gma03g00489 166 CDD HMGB-UBF_HMG-box 53 119 - -
Gma03g00489 166 SUPERFAMILY HMG-box 38 122 IPR036910 -
Gma03g00489 166 MobiDBLite consensus disorder prediction 8 28 - -
Gma03g00489 166 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00489 Gma-Chr3 8809468 8812766 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gma03g00489 HMG_box 2.4e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00489 K25507 - gmx:100499704 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00489 03 8809468 8812766 Gma03g00489 03 8809468 8812766 ECH