Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00487 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCAGTTCGCGAATACTCTGGCTTCTGATTGTCCAAGAGAATCTGATGGCGCCTCCATACAAATGAGATTGTCTTACAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCACCTTGCTGGAGTTTTGGGATTGCTGAGAATTCTCATATATAAGGTATATGAAGATGGGAAGACAACCATGTCCATTTATGAAAAGAAAGCCAGTTTGAAGGAATTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATCAGTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACAAGCCAAGAGATATAATAAGAAGAGGAAAATCATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGCTGCCCAATTGCAACCACTCGTTATGTATGAAATGCTACAGAAACTGGCATGCACGATCTCAATCTTGCCCTTTCTGTCGGGACACTCTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGATAGATGACTTAGCTTCAATCAACAAGGAGAATCTAAAAGGACTATTTATGTACATTGACAAGTTACCTCTAATTGTGCCAGATCCTATATTCATGTCCTATCCTCAGCGCTTTCGATTTTTCCCTAATCAATTTGGGTCTGCATGA 756 0.3981 MRKSFKDSLKALEADIQFANTLASDCPRESDGASIQMRLSYSPAAQFFLFLVQWTDCHLAGVLGLLRILIYKVYEDGKTTMSIYEKKASLKEFYGVIFPSLLQLHRGISDVEERKQKDLCATKYKPRDIIRRGKSSEIDIEREEECGICMEMNNKVVLPNCNHSLCMKCYRNWHARSQSCPFCRDTLQRVNSGDLWIYMNSNEIDDLASINKENLKGLFMYIDKLPLIVPDPIFMSYPQRFRFFPNQFGSA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00487 251 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Gma03g00487 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 212 IPR013083 -
Gma03g00487 251 SUPERFAMILY RING/U-box 136 189 - -
Gma03g00487 251 PANTHER RING FINGER PROTEIN 41, 151 1 241 - -
Gma03g00487 251 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Gma03g00487 251 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Gma03g00487 251 SMART ring_2 146 183 IPR001841 -
Gma03g00487 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE AIRP2 1 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00487 Gma-Chr3 8791490 8794513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00487 90 184 C3H Transcription Factor Family AT5G01960 31.000 9.49e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00487 K25840 - gmx:100819267 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00487 03 8791490 8794513 Gma03g00487 03 8791490 8794513 ECH