LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g00416	ATGTCTTCTGCCTACGGTTACGACGACTACGATATCCATGATGATCAGATTGAGATGGAGATGGACTTTCTGCATGAACGGTATCAGGAGGACAACAGAAACTATGACGTGTTTTTGAGTTTCAGAGGGGAAGACACGCGTGCTTCTTTCACTTCACATCTCTATACCGCTATTCGCAACGAGGGAATCTTTGTTTTCAAGGATGTTGAGACACTTCCAAGGGGAAATAAAATTTCACCCTCGCTGCAGTTAGCAATTGAAGAGTCTCGAGTTTCTGTTGTTGTTTTCTCTAGAAATTATGCAGAGTGGCGGTGGTGTTTGAAAGAGTTGGAGAAAATAATGGAGTGTCACAGAACAACAGGGCAAGTGGTAGTGCCAGTGTTCTATGATGTAGATCCCTCTGAAGTACGTCATCAAACAGGCCACTTTGGAAAAGCATTTCGAAACCTTGAGAACAGACTTTTAAAAGTggaagaggaagaggaagaggaagaggaagaggaagaggaaAAGCTACAACGATGGTGGAAGACGCTTGCTGAGGCCGCTGGCATCTCAGGGCTTTCTGTTGTCCGAAATTGCAAGAATGAAAGTGAGGCTATCAAAACTATTGTTGAAAACGTTACGCGTTTGTTAGACAAGACAGAGTTGTTCGTTGCTGATAATCCAGTCGGCGTAGAACCACGAGTCCAGGAAATGATTGAACTAATAGACCAAAAACAatcaaatgatgttctactactcgggatgtgggggatgggaggcattggtaaaacgactattgcaaaagccatttacaataagattggccgcaattttgagggaaaaagcttcctcgcacatattaggaaagtttgggagcaagatgctggtcaagtatatctacaagaacaacttctatttgatatcgaaaaagaaacaaacacaaagatgcgtaatgttgaatcaggaaaagttatgttaaaagaacgacttcgccataaaagggtacttcttatacttgatgatgtaaataaattgcatcaattgaatgttttgtgtggaagtcgtgaatggtttggttcagggagtagaataatcatcacaactagagatatgcatatacttagagggagaagagttgacaaagtgttcagaatgaaaggaatggatgaagacgaatctattgagctttttagttggcatgcatttaagcaagcaagtccaagagaagattttattgaactttctagaaatgtagttgcttattctgcgggattgccactagctcttgaagtccttgggtcctatttgtttgatatggaggtaacagagtggaagaatgtattggagaaactcaagaaaattcctaatgatgaagtacaagagaaattaaaaataagctatgatggtttaactgatgatacagagaaaggaatattccttgatatagcttgtttctttataggaatggaccggaatgatgctatacatatattaaatggttgtgggctttgtgcagaaaatggaatacgtgtcttggtagaaagaagccttgtaactgtagattataagaacaagcttggaatgcatgatttgctgcgagacatgggaagagaaatcattcgttcaaaaacaccaatggagcttgaggagcgtagtaggttatggtttcatgaagatgcgcttgatgtattatcaaaagaaactggaacaaaagctattgagggactagctttgaagttaccaagaactaatacaaaatgtttgagcactaaagcttttaaggagataaaaaaactcaggttgcttcaacttgctggtgtacaactggttggagatttcaagtatctttccaaagatcttagatggctttgttggcatggatttcctttagcatgcataccaacaaacctttatcaaggaagtctagtttccattgagctagaaaacagcaaTGTTAATCTTTTGTGGAAAGAAGCCCAG	1965	0.1557	MSSAYGYDDYDIHDDQIEMEMDFLHERYQEDNRNYDVFLSFRGEDTRASFTSHLYTAIRNEGIFVFKDVETLPRGNKISPSLQLAIEESRVSVVVFSRNYAEWRWCLKELEKIMECHRTTGQVVVPVFYDVDPSEVRHQTGHFGKAFRNLENRLLKVEEEEEEEEEEEEEKLQRWWKTLAEAAGISGLSVVRNCKNESEAIKTIVENVTRLLDKTELFVADNPVGVEPRVQEMIELIDQKQSNDVLLLGMWGMGGIGKTTIAKAIYNKIGRNFEGKSFLAHIRKVWEQDAGQVYLQEQLLFDIEKETNTKMRNVESGKVMLKERLRHKRVLLILDDVNKLHQLNVLCGSREWFGSGSRIIITTRDMHILRGRRVDKVFRMKGMDEDESIELFSWHAFKQASPREDFIELSRNVVAYSAGLPLALEVLGSYLFDMEVTEWKNVLEKLKKIPNDEVQEKLKISYDGLTDDTEKGIFLDIACFFIGMDRNDAIHILNGCGLCAENGIRVLVERSLVTVDYKNKLGMHDLLRDMGREIIRSKTPMELEERSRLWFHEDALDVLSKETGTKAIEGLALKLPRTNTKCLSTKAFKEIKKLRLLQLAGVQLVGDFKYLSKDLRWLCWHGFPLACIPTNLYQGSLVSIELENSNVNLLWKEAQ	655

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma03g00416	655	Gene3D	-	219	376	IPR027417	-
	Gma03g00416	655	CDD	AAA	224	381	-	-
	Gma03g00416	655	Gene3D	-	382	466	IPR042197	-
	Gma03g00416	655	SMART	AAA_5	244	384	IPR003593	-
	Gma03g00416	655	Coils	Coil	147	175	-	-
	Gma03g00416	655	Pfam	NB-ARC domain	229	457	IPR002182	GO:0043531
	Gma03g00416	655	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	211	477	IPR027417	-
	Gma03g00416	655	Gene3D	-	31	218	IPR035897	-
	Gma03g00416	655	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	41	645	IPR044974	GO:0006952
	Gma03g00416	655	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	41	645	-	-
	Gma03g00416	655	SMART	till_3	34	185	IPR000157	GO:0007165
	Gma03g00416	655	PRINTS	Disease resistance protein signature	324	338	-	-
	Gma03g00416	655	PRINTS	Disease resistance protein signature	417	431	-	-
	Gma03g00416	655	PRINTS	Disease resistance protein signature	247	262	-	-
	Gma03g00416	655	PRINTS	Disease resistance protein signature	589	605	-	-
	Gma03g00416	655	Pfam	TIR domain	34	209	IPR000157	GO:0007165
	Gma03g00416	655	ProSiteProfiles	TIR domain profile.	33	183	IPR000157	GO:0007165
	Gma03g00416	655	SUPERFAMILY	"Winged helix" DNA-binding domain	452	559	IPR036390	-
	Gma03g00416	655	SUPERFAMILY	Toll/Interleukin receptor TIR domain	25	187	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g00416	Gma-Chr3	7059217	7088193	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g00416	32	652	WRKY Transcription Factor Family	AT4G12020	30.442	1.03e-70	248

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g00416	-		-	gmx:100808685	963.37