Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00394 ATGATGCACCCTGAAATTCTCGAATCCTCATCATGGTCTTCAATCTACGAAGTCAATAGCTCAACTATTGGTCATCAATTTGAGCACTATGGCTTTGAAGTTGATGCCCATGTGGGTGTTTCAGTATTCAATTCCTTGTTCAACACTCCAGAGAACACTTCCTCGGAAACTTCCATAAACACTTTACCTTCAATCATGTTCACAAATGAATATGATCATTTTTTACACTACCAAATTGAAAAAGACACCCTTCAACTCCCAACATTGATGGACGTCTATGGTTTGTCTATGGATTGTGATGATTTTGATCCCATCTTAAGGGATCATCAAGAAAGTGAAGGAGATTGGAGTCCTACCCCATCTTTGGACTCAGATTTATCATCAAATCAAAAAGCACTTACCTTGCCTCAACAAGGCATGGAAATTGAAAACCAAGTGAGTCTTCCACACATGTTGGAGGCCCTTGGAGAAGCCATATATCAAGGGAAGAAAGCACTAAAAGAAGTGATCTTGAGATGCATGAGGCAGAAAGTTAGTCCACTTTATGAACCTCTTGAGCGTGTTGCTTTCTATTTGTGCCAAGACATGGAAACAAGACAAGATGATTTTTATCTCAAACAAGAGGCTTCCAAGAACTTTGAGGCAGCGTTTAAGGCCTTCTACCAAGGCCTCCCACATGGAAAAGTTGCTCACTTTGTGGCTAATTTGGCAATTCTTGAGGCCTTGCCCCATGATTCTGAAGTCATACACATAGTGGATTTTGACATGGGAGAAGGGTCTCAATGGCCTCCATTGATTGAGTCCATTGCAACCCTTCGCAAAACATTGAAGTTGACAGCAATCAAACGGGGAGAGGAAGGTTCCGAGGTTGTTTCCTCTCCATGGAAATTTGAGGAAATTAAAAGGGTGCTTCATGAGCATGCTAGATCTCGTGATTTGAAGTTGATGGTGGAGGAGAAGGAAATGGAGGAAGTGATTAGTGAGCTTAAGAAAATTAACAAAAGTGTTGGAAGTGGAAAGAGAGATTTTTATGCCTTCAATTGCATGGTGGGTCTTCCTCACATGGGGAGAGGGACTAGTAGAAGGCATGCCACGGAGTTTCTAAATTTGATCAAGAGTTGTGGAAGCAGGGGAATTGTCACTTTTGGAGATGCAAGAGTTTGTGAGAAGTTGGAAAATGACTTGGAATTCGTGTCATTCTTTGAGAGGCATTTGTTGCATTACAAGGCCTTGTTGGAGTCAATTGAATCACATTTCCCAAACCATTTCACAGATGCAAGAAGTGCCATGGAGTGCCTATTTGTGGCACCAAATATCTCTTCCCTTGCTTGGTTGCAAAAGTGGGAAGAGATCAAAGAGGAGTCGGAGTCCTATTTTCAGGCAGATATTAGCTTAGAGGGTTTGAGATTGAGCAATGCAATTTTAATGGAAGTCGGAGAGATGTTGAGTGGAAGTGAACAAGGTTCATATCAAGCCAGGATTGAAGGACAGAATGACAATCAATTGACTTTGGAATGGAAAGGAACCCCTCTAGTAAGAGTTTCAACTTGGAGAAAGATCAAAGGCCAATGA 1572 0.416 MMHPEILESSSWSSIYEVNSSTIGHQFEHYGFEVDAHVGVSVFNSLFNTPENTSSETSINTLPSIMFTNEYDHFLHYQIEKDTLQLPTLMDVYGLSMDCDDFDPILRDHQESEGDWSPTPSLDSDLSSNQKALTLPQQGMEIENQVSLPHMLEALGEAIYQGKKALKEVILRCMRQKVSPLYEPLERVAFYLCQDMETRQDDFYLKQEASKNFEAAFKAFYQGLPHGKVAHFVANLAILEALPHDSEVIHIVDFDMGEGSQWPPLIESIATLRKTLKLTAIKRGEEGSEVVSSPWKFEEIKRVLHEHARSRDLKLMVEEKEMEEVISELKKINKSVGSGKRDFYAFNCMVGLPHMGRGTSRRHATEFLNLIKSCGSRGIVTFGDARVCEKLENDLEFVSFFERHLLHYKALLESIESHFPNHFTDARSAMECLFVAPNISSLAWLQKWEEIKEESESYFQADISLEGLRLSNAILMEVGEMLSGSEQGSYQARIEGQNDNQLTLEWKGTPLVRVSTWRKIKGQ 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00394 523 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 26 518 - -
Gma03g00394 523 MobiDBLite consensus disorder prediction 108 128 - -
Gma03g00394 523 ProSiteProfiles GRAS family profile. 139 518 IPR005202 -
Gma03g00394 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 26 518 IPR005202 -
Gma03g00394 523 Pfam GRAS domain family 150 518 IPR005202 -
Gma03g00394 523 Coils Coil 315 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00394 Gma-Chr3 6549696 6551314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00394 174 518 GRAS Transcription Factor Family AT5G66770 28.729 1.53e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma03g00394 GRAS 2.6e-42 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00394 - - gmx:100791800 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00394 03 6549696 6551314 Gma03g00394 03 6549696 6551314 ECH