Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00325 ATGCAGCCAAGAGCAAGTGTTGGAGATGGTTTTCGAGTAAGTGCCTCAAGTACTCCTAGTAATTCTAGTGGTGGATCTGAACCAGATGACATAGACTCATTTCATGCTGTTTATATATGGGGGGAGGTTTTGGCAAATGGGGTTTCACCTGATGGGATTGGAACTCAAATCCCTTCTAAGACAGATGTATTGATCCCTAAGGCTTTAGAGTCAAATGTTCTTGATGTGTGTCACATTGCAACTGGCGCACATCACATTGCTATAGCAACTAGGCAAGGACATGTTTTTACTTGGGGACAAGAATCAGGGGGAAGACTTGGTCATGGAATTGATAAAGATTTTTCCTCTCCTGTTCTAGTTGAGTTTCTAGAAGGCAATAATTTTGAATTTGTTGCATGTGGAGAGTATCATACAAGTGCTTTATCTAAATCTTTTGAACTTTATACGTGGGGTGATGGAACACATAATGTTGGACTTCTTGGACATGGTTCTGAGGCTAGCCATTGGATACCAAAAATGGTAAATGGCCCTTTGGAAGGACTTCAAGTTGTGTCTATTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCAAATGGAAAACTTTTTACCTTTGGTGATGGGGCATTTGGTGTATTAGGCCATGGAGATCAAGAAAGTGTGTGGTATCCAAAGGAGGTACAACTATTAACTGGACTAAAGACTATAAAGGTTGCATGTGGAGTTTGGCACACAGCAGCTATTATAGAGGTTGCATTTCAATCTGGTTCAAATAGTTCATCATGGAAGCTTTTCACATGGGGAGATGGAGACATGCATCGGTTGGGTCATGGAAACAAGGAAACATACCTTCAACCTACTCGTGTCGCTCCACTTATGGAGTATAATTTCCACCAAGTAGAATGTGGTCACAATATGACAATTGCTCTCACTACATCTGGTCATGTCTTTACCATGGGAGGCACAGAACATGGTCAATTAGGAAATCCTATGTCACTTGGAAAAATACCTACTCTAGTCCAAGATAAGTTGCTTGGTGAGTTTGTTGAGAAAATATCATGTGGAGCACATCATGTTGCTATCTTGACAAATAAAAGTGAAATATATACATGGGGAATGGGTGCTAATGGAAGATTAGGACATGGAGATGTAGAAGATAGGAAATCCCCTACATTGGTGGTAGCTTTAAAAGATAGGAATATAAAAAATGTGTCATGTGGCTCTAATTTTACATCATGTATATGTGTACATAAATGGGTCTCTGAAACTGATCAATCAATTTACAATGGTTTTCGGCAAGCATTTGGTTTAACAAAAAAGAGACATAACTGTCACAATTGTGGATTGGCCTGTAGTTCTAAAAAGACATTGAAAGCAACAACATTGACTCCAACACCAGAAAAACCTCATCGAGTGTGCGATAATTGTAATGTTAAGCTTAAAGTTGTTAATGATAATGGTGCCTCCAAGTTAGATAGAAAAGTCACTCCTTCTCATCATTCCATAAATGGAAATGAAAGATTGGGCCAAGGAACAATAAGGTCTACAAGAACTCTCTTGTCTCCCATCACTGAACCAATTAAATACCTTGAGATAAAGAATAGTAATCCAAAAAACAAATTTGATTCTACTTCATTTATACGAGCTTCTCAAGTTCCATCTCATGTACAATTGAAAGACATTGCATTTCCAAGTTCACTTAGTTCTTCTCAAAGTGTTTTAAAGTCTACTATACCTCTTGCTAGTCCACCACGAACTCCACCACCACATACCAATTCAGGGCCCATATTTACAAACACAAGAAAACAAAGCCCTACACGTCTTGCTAGTCCTAGATACTTTGGTTGTCTTAACAACAATTTAAGAAGGACAAATGATGCTTTGAATCAAGAAGTTTCAAAGTTACAAAATCAGATTCAAAGTTTGAAGCAGAGAAGTGACATGCAGGATGTGGAAATTAAAAAGCTTAACAAAAAAGTTGTGGAAGCTATTGCCTTTTCTGCAGTGGAATCTTCTAATCATGGAGTAACAAAAGAATTTTTTGAATCTACTGTTTATCAGTTAAAGGAAATAACTGAGAAGCTGCCACAAAAAATTCCAGAAAGTAAAACTTTAAGAATCGTGCTTACACAAGCTGAAGATTTTCTTAAAGGAATTTTAGAATCTAAAACATCTTCATCATCAAAGTTGGAGTCTAAGCAACCAAATGCACCTGATATACCAAATTTGAATAATGGCTCTTCTAATCTACAAAAGAATAGAGTTGAAGAAAATGTGGATATTGCAGGAGTCAATCCTTGTCAAGATGAAGGGAAATTCCTTGAAGAAAGTAATATATCAAACTTGCAGCCAAAGAAACAAAATGCACTTGATATAGCTACCTTAGATGGTGTTTGTTCCAAACTACAAAAACAAAGAATACAAGAAAATATGGAGGCTAATGGAGCCAATCCTTGTCATGATGAAGAAAGTTTCCTTGAAGAAAGCAATAAGTCAAAGTTGGACTATAGGAAACAAAATATACCTACTTCAGATACTAGCACTTCAAAAATGCGAGAACACAAACTAGATAAAAATGTTGATGATGTAGAACTTGACTCTTGTCAAGATAGAGAAATTTTACTTGAAGAAAGTAGTGAGACAAATTTGGACATTAATTACCAAAATGCGCCTAATATGCTTGCCTCAATTAGTGACGTTTCTGAATTTCAAGATGATAAACTAGAGGAAAATGTTGAGGTTGCAAGAGTTGATCCATCTCAAGCAGAAGGACATATCCCTCAAGAATGTAATGGGTCATTTGCATCAAGTGTTTGCAAAATAATGCCTTCACAAAACTCATACAATGATTCAAGATCAATGGACACTTCAAGACTCGGGAAACAAGGAGAGATACAAGTTATTGAAAAATTTGAACGTGGTGTTTATGTGATACTCATGTTACAATCTGATGGTACCAAAAATTTTAAACGAGTTAAATTCAGTAAACGAAGATTCACTGAAAATCAAGCAGAAGAGTGGTGGAACCAAAACAAAAGTAGGGTTCTTAGGGAATATTGTCCAGCACATAAAAAACTAACAGTTGGACCATCTAATGTCACATCACAAGTTAAAGAAATGATTGAATCATCTCCTAAATAG 3141 0.3677 MQPRASVGDGFRVSASSTPSNSSGGSEPDDIDSFHAVYIWGEVLANGVSPDGIGTQIPSKTDVLIPKALESNVLDVCHIATGAHHIAIATRQGHVFTWGQESGGRLGHGIDKDFSSPVLVEFLEGNNFEFVACGEYHTSALSKSFELYTWGDGTHNVGLLGHGSEASHWIPKMVNGPLEGLQVVSIACGTWHSALATSNGKLFTFGDGAFGVLGHGDQESVWYPKEVQLLTGLKTIKVACGVWHTAAIIEVAFQSGSNSSSWKLFTWGDGDMHRLGHGNKETYLQPTRVAPLMEYNFHQVECGHNMTIALTTSGHVFTMGGTEHGQLGNPMSLGKIPTLVQDKLLGEFVEKISCGAHHVAILTNKSEIYTWGMGANGRLGHGDVEDRKSPTLVVALKDRNIKNVSCGSNFTSCICVHKWVSETDQSIYNGFRQAFGLTKKRHNCHNCGLACSSKKTLKATTLTPTPEKPHRVCDNCNVKLKVVNDNGASKLDRKVTPSHHSINGNERLGQGTIRSTRTLLSPITEPIKYLEIKNSNPKNKFDSTSFIRASQVPSHVQLKDIAFPSSLSSSQSVLKSTIPLASPPRTPPPHTNSGPIFTNTRKQSPTRLASPRYFGCLNNNLRRTNDALNQEVSKLQNQIQSLKQRSDMQDVEIKKLNKKVVEAIAFSAVESSNHGVTKEFFESTVYQLKEITEKLPQKIPESKTLRIVLTQAEDFLKGILESKTSSSSKLESKQPNAPDIPNLNNGSSNLQKNRVEENVDIAGVNPCQDEGKFLEESNISNLQPKKQNALDIATLDGVCSKLQKQRIQENMEANGANPCHDEESFLEESNKSKLDYRKQNIPTSDTSTSKMREHKLDKNVDDVELDSCQDREILLEESSETNLDINYQNAPNMLASISDVSEFQDDKLEENVEVARVDPSQAEGHIPQECNGSFASSVCKIMPSQNSYNDSRSMDTSRLGKQGEIQVIEKFERGVYVILMLQSDGTKNFKRVKFSKRRFTENQAEEWWNQNKSRVLREYCPAHKKLTVGPSNVTSQVKEMIESSPK 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00325 1046 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 1026 - -
Gma03g00325 1046 MobiDBLite consensus disorder prediction 574 604 - -
Gma03g00325 1046 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1026 - -
Gma03g00325 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 365 IPR000408 -
Gma03g00325 1046 SUPERFAMILY RCC1/BLIP-II 36 419 IPR009091 -
Gma03g00325 1046 MobiDBLite consensus disorder prediction 1 28 - -
Gma03g00325 1046 PRINTS Chromosome condensation regulator RCC1 signature 95 111 IPR000408 -
Gma03g00325 1046 PRINTS Chromosome condensation regulator RCC1 signature 202 216 IPR000408 -
Gma03g00325 1046 PRINTS Chromosome condensation regulator RCC1 signature 361 382 IPR000408 -
Gma03g00325 1046 PRINTS Chromosome condensation regulator RCC1 signature 303 321 IPR000408 -
Gma03g00325 1046 PRINTS Chromosome condensation regulator RCC1 signature 145 161 IPR000408 -
Gma03g00325 1046 PRINTS Chromosome condensation regulator RCC1 signature 186 202 IPR000408 -
Gma03g00325 1046 MobiDBLite consensus disorder prediction 814 852 - -
Gma03g00325 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 313 IPR000408 -
Gma03g00325 1046 MobiDBLite consensus disorder prediction 11 28 - -
Gma03g00325 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 491 IPR013083 -
Gma03g00325 1046 ProSiteProfiles BRX domain profile. 965 1020 IPR013591 -
Gma03g00325 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 417 IPR000408 -
Gma03g00325 1046 Coils Coil 618 659 - -
Gma03g00325 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 93 144 IPR000408 -
Gma03g00325 1046 Gene3D - 257 419 IPR009091 -
Gma03g00325 1046 MobiDBLite consensus disorder prediction 821 835 - -
Gma03g00325 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 200 251 IPR000408 -
Gma03g00325 1046 SUPERFAMILY FYVE/PHD zinc finger 433 485 IPR011011 -
Gma03g00325 1046 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 238 248 IPR000408 -
Gma03g00325 1046 MobiDBLite consensus disorder prediction 724 750 - -
Gma03g00325 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 367 414 IPR000408 -
Gma03g00325 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 147 195 IPR000408 -
Gma03g00325 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 313 361 IPR000408 -
Gma03g00325 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 93 141 IPR000408 -
Gma03g00325 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 199 248 IPR000408 -
Gma03g00325 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 264 310 IPR000408 -
Gma03g00325 1046 Gene3D - 12 256 IPR009091 -
Gma03g00325 1046 SMART fyve_4 416 482 IPR000306 GO:0046872
Gma03g00325 1046 Pfam Transcription factor regulating root and shoot growth via Pin3 966 1019 IPR013591 -
Gma03g00325 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 145 199 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00325 Gma-Chr3 5136872 5141276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00325 964 1019 Major Intrinsic Protein MIP AT1G31880 42.857 1.31e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00325 - - gmx:100798841 1960.65