LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g00300	ATGGCGTTTTCTCCGGAAACGTTTACAACCCGAAAACGACGCCCCCGAGGGTCGTCGTTTACGTCCCCGAAGGTAAACGACCTTAACGTGTTGAGCTCTTTGCTTCAACTAACGGATCAGATATGTTCCCTAAATCTCACAGCCACCCTCTTAAACCGTGTTTCCTCTTCCACCATCCGCAAAACGCAGCTCCTCGGCGTCGTTTTCGAGGAGCTCTTCCGCGTTTCGAATCTGAACTCCGATTCCGTTCTGTTCCTCTGCCTCGAGGAAATGTACATCGTTCTCCACAAGCTCAAAACCCTAATCCAAGATTTCTCCAACGGAAGCAAGTTCAATTTGCTCATGCAGATCGATACCGTCGCGGAGAGCTTCCACAGGCTCACCGGAGAACTCTCCACGCTCCTCGACGTGTTCCCTCTCCAAGACCTCGACCTCAACGACGACGTTAGGGAACTCGTTCTCCTCGTCAGAAAACAGTGCTCTGAAGCGAAGGCGTTCATCGGAGCCGAACATGTCAGCCTCCGGAACGACGTCGTTTTGGTCCTCGACCGGATCAAGAACGAGATCGTCCCCGACCAAGCGCATCTCGCTTCAATCTTCGAGAAATTGGAGATTCGCGACGCGTCGAGCTGCAGAGCGGAGATTGAGAGCCTCGAGGAAGAGATTCACAACCGTTGCGAAGAGCAACCGAAAACAGATCTCGTCGCGTTAATCGGCCTCGTCCGTTTCGCGAAGTGCGTTCTCTACGGCGCGTCAACGCCGTCGCAGAAAACCGTCACTCTGCGGCGGAACCAGTCGTCGGAGCTGGCGATTCCGGCGGATTACCGGTGTCCGATAAGCCTAGAGCTCATGCGCGATCCCGTCGTGGTGGCAACAGGACAAACATACGATCGTGTATCGATCAAGCTCTGGATGGATTCTGGACACAACACGTGTCCAAAAACGGGTCAAACGTTATCACACAGCGACCTAATCCCCAATCGCGTCCTGCGGAACATGATAACAGCGTGGTGCCGCGAGCAGAGAATCCCCTTCGAAGCAGAAACGGATACAGGGAAACTCAACGGTGGAGTTACCAACAAAGCCGCATTAGAAGCCACGCGAATGACGGTGTCGTTTTTGATCAACAAGCTCAAGGGAAGGGAAAACGATAACGTTAACGTTCCTTTGAGTGTTGAAGACACAAACGGCGTCGTTTACGAGCTTCGGGTGTTGGCTAAGACAGATTCGGATAGCCGAGCTTGTATAGCCGAAGCGGGAGCGATTCCGGTTTTGGTTCGGTTCCTTAATGCGGAGAATCCGAGCCTGCAGGTTAACGCCGTCACGACGATTTTGAACATGTCAATATTGGAAGCGAATAAGACTAAGATAATGGAGACTGATGGCGCGTTAAACGGCATCGCCGAGGTTTTGATATCGGGTGCCACGTGGGAGGCCAAGGCGAACGCGGCAGCGACGGTGTTTAGTTTGTCAGGTGTGGCGGCGCACAGAAAGAAGCTGGGGAGGAAGACACGTGTCGTGAGCGGGTTGGTGGGTTTGGCCAAGAGTGGGCCCGAGGGGGCGAGGAGGGACGCTCTGGCGGCGATATTGAACTTGGCGGCGGATAGGGAGACGGTGGCGAGGTTGGTGGAGGGAGGTGTGGTGGGGATCGCGGCCGAGGTGATGGCGGCGATGCCGGAGGAGGGGGTGACGATTCTGGAGGCAGTGGTGAAGAGGGGTGGGTTGGTGGCGGTGGCGGCGGCGTACGCCGGGATTAAGAGGCTAGGGGCTGTGCTGAGGGAGGGGTCGGAGAGGGCGAGGGAGAGCGCGGCGGCGACGCTGGTGACAATGTGTCGGAAAGGGGGGTCGGAGGTTGTGGCGGAGATGGCGGCGGTGCCCGGCGTGGAGAGGATCATTTGGGAGCTTATGGCGGTGGGAAGTGTCAGGGGGCGGCGGAAGGCGGCGACGCTGTTGAGGATTCTGCGGCGGTGGGCGGCGGGGCTCGACGGTGGCGAAAATGAAGGGTTCCCGACAACTACCACCATGGTTGCTTCCTCAACCACTACTGTGGTTGTTCCAACCACCACCACTTCGTTAGCACAGTAA	2085	0.5664	MAFSPETFTTRKRRPRGSSFTSPKVNDLNVLSSLLQLTDQICSLNLTATLLNRVSSSTIRKTQLLGVVFEELFRVSNLNSDSVLFLCLEEMYIVLHKLKTLIQDFSNGSKFNLLMQIDTVAESFHRLTGELSTLLDVFPLQDLDLNDDVRELVLLVRKQCSEAKAFIGAEHVSLRNDVVLVLDRIKNEIVPDQAHLASIFEKLEIRDASSCRAEIESLEEEIHNRCEEQPKTDLVALIGLVRFAKCVLYGASTPSQKTVTLRRNQSSELAIPADYRCPISLELMRDPVVVATGQTYDRVSIKLWMDSGHNTCPKTGQTLSHSDLIPNRVLRNMITAWCREQRIPFEAETDTGKLNGGVTNKAALEATRMTVSFLINKLKGRENDNVNVPLSVEDTNGVVYELRVLAKTDSDSRACIAEAGAIPVLVRFLNAENPSLQVNAVTTILNMSILEANKTKIMETDGALNGIAEVLISGATWEAKANAAATVFSLSGVAAHRKKLGRKTRVVSGLVGLAKSGPEGARRDALAAILNLAADRETVARLVEGGVVGIAAEVMAAMPEEGVTILEAVVKRGGLVAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVAEMAAVPGVERIIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGENEGFPTTTTMVASSTTTVVVPTTTTSLAQ	694

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma03g00300	694	PANTHER	U BOX DOMAIN-CONTAINING	16	673	-	-
Gma03g00300	694	MobiDBLite	consensus disorder prediction	1	20	-	-
Gma03g00300	694	Gene3D	-	391	661	IPR011989	-
Gma03g00300	694	CDD	RING-Ubox_PUB	275	317	IPR045210	-
Gma03g00300	694	SUPERFAMILY	RING/U-box	267	344	-	-
Gma03g00300	694	Pfam	U-box domain	271	342	IPR003613	GO:0004842\|GO:0016567
Gma03g00300	694	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 16	16	673	-	-
Gma03g00300	694	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	420	462	IPR000225	GO:0005515
Gma03g00300	694	ProSiteProfiles	U-box domain profile.	270	344	IPR003613	GO:0004842\|GO:0016567
Gma03g00300	694	Pfam	Armadillo/beta-catenin-like repeat	410	448	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g00300	Gma-Chr3	4369969	4372210	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g00300	11	689	U-box Gene Family	AT5G01830	55.848	0.0	718

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g00300	-		-	gmx:100805405	1255.35

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma03g00300	03	4369969	4372210	Gma03g00300	03	4369969	4372210	ECH

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