Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00296 ATGAGTTACAGAGAAAGGAACAAAGGGAAGGGAGAAGAGAAGGAATATGAGAACAGTACTACTGTGGGATTGGATTCAAAATCAGTGAGTCACAACAATGGTTCAATAGAAGAGGAGCTGCTAACAATTGATGAGAATCTTctgattgaccccaaactgttgtttattgggtcaaaaattggagagggagctcatgggagggtttatgaaggaagGTATAGAGATCGGATTGTTGCGATTAAAGTTCTGCATCGTGGGGGTACGTTGGAAGAAAAAGTTGCCCTTGAGAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTGGTGAAGTTTATTGGAGCTTGTAAGGCTCCTCTCATGGTGATTGTTACAGAGATGTTACCTGGGTTGTCCCTGCGAAAATATCTAACCACCATACGCCCTAAGCAATTGGACCCTTATGTGGCTATAAAGTTTTCCCTTGATGTTGCTCGAGCCATGGATTGGTTACATGCCAATGGGATCATACATAGAGATCTGAAACCTGACAATCTGCTTCTCACAGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGActgaaatgatgacggcagagactggaacttaccgttggatggcacctgagTTGTACAGTACCGTGACATTGCGTCAAGGTGAGAAAAAGCATTACAACAATAAGGTTGATGTCTATAGCTTTGGAATTGTGTTGTGGGAGCTACTTACAAACCGCATGCCTTTTGAAGGGATGTCGAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGATGATATTTCTCCTGATCTTGCCTTTATCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATTCGCTTACTCAATGAGTTTCTCTTCACACTCCAACAACCATCCCCTTCGTTGCCGCCAGAACCTGAGAACAAACCTGAGGCCGTAACAAGTAACGAAGGGGCTGCATCAGGTATCAAGAAGGAGAATGTTTTCAAAAGCTATTTGGAGCTACAAGATTTTGGTCAGCAGGCTGGAAATGCTAATTTACAAGATATAGGTTCTTCATTGGAGATTCAAAATTCAGTAGAGGAATCTAATGTAAGTTGTCCTGCAGTTGATGAAAATGAACAAGAGAGCATTGCAATATCTAAAAGTGGTGATGAGTTATCACCTCATAGTGGTTCTACTTCTTCTAATGGCCATAGATCTCTGAAATCAGAGTTGGAAATTCAAGAGGTTGAGAAAAATGCATCAAGAAAAACTGAAACTGCTTCTGGCTCTCATTCTGTTACTACTGATACTGAACATAATGACGAACATGTTGACAAGTCAGTATCAAATGATGAGTTAGATAAGAGTCAACAACCCCCTGCACTCAAAGATGTTAGGGCTACAAGTGAGGTGGTGAAGCCTCAAACAGAAACTTCAAATAAAGGGGATCAAAGCCATTTGGGTTTGGGTAAGACCAGTGTTGCAAATGATTTGCACTTGGATTCTGCAATTATTCAATATTAA 1590 0.3767 MSYRERNKGKGEEKEYENSTTVGLDSKSVSHNNGSIEEELLTIDENLLIDPKLLFIGSKIGEGAHGRVYEGRYRDRIVAIKVLHRGGTLEEKVALENRFAREVNMMSRVHHENLVKFIGACKAPLMVIVTEMLPGLSLRKYLTTIRPKQLDPYVAIKFSLDVARAMDWLHANGIIHRDLKPDNLLLTENQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPDDISPDLAFIIQSCWVEDPNMRPSFSQIIRLLNEFLFTLQQPSPSLPPEPENKPEAVTSNEGAASGIKKENVFKSYLELQDFGQQAGNANLQDIGSSLEIQNSVEESNVSCPAVDENEQESIAISKSGDELSPHSGSTSSNGHRSLKSELEIQEVEKNASRKTETASGSHSVTTDTEHNDEHVDKSVSNDELDKSQQPPALKDVRATSEVVKPQTETSNKGDQSHLGLGKTSVANDLHLDSAIIQY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00296 529 CDD STKc_MAP3K-like 60 315 - -
Gma03g00296 529 MobiDBLite consensus disorder prediction 430 446 - -
Gma03g00296 529 SMART serkin_6 54 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g00296 529 MobiDBLite consensus disorder prediction 409 429 - -
Gma03g00296 529 ProSiteProfiles Protein kinase domain profile. 54 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g00296 529 MobiDBLite consensus disorder prediction 457 474 - -
Gma03g00296 529 MobiDBLite consensus disorder prediction 1 30 - -
Gma03g00296 529 MobiDBLite consensus disorder prediction 493 513 - -
Gma03g00296 529 MobiDBLite consensus disorder prediction 1 20 - -
Gma03g00296 529 PANTHER SERINE-THREONINE PROTEIN KINASE 25 339 - -
Gma03g00296 529 Gene3D Phosphorylase Kinase; domain 1 43 133 - -
Gma03g00296 529 Gene3D Transferase(Phosphotransferase) domain 1 137 358 - -
Gma03g00296 529 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 25 339 - -
Gma03g00296 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Gma03g00296 529 SUPERFAMILY Protein kinase-like (PK-like) 53 334 IPR011009 -
Gma03g00296 529 PRINTS Tyrosine kinase catalytic domain signature 130 143 IPR001245 GO:0004672|GO:0006468
Gma03g00296 529 PRINTS Tyrosine kinase catalytic domain signature 242 264 IPR001245 GO:0004672|GO:0006468
Gma03g00296 529 PRINTS Tyrosine kinase catalytic domain signature 286 308 IPR001245 GO:0004672|GO:0006468
Gma03g00296 529 PRINTS Tyrosine kinase catalytic domain signature 168 186 IPR001245 GO:0004672|GO:0006468
Gma03g00296 529 MobiDBLite consensus disorder prediction 409 520 - -
Gma03g00296 529 Pfam Protein tyrosine and serine/threonine kinase 56 315 IPR001245 GO:0004672|GO:0006468
Gma03g00296 529 ProSitePatterns Protein kinases ATP-binding region signature. 60 81 IPR017441 GO:0005524
Gma03g00296 529 MobiDBLite consensus disorder prediction 325 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00296 Gma-Chr3 4248412 4258790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00296 42 318 MAP Kinase Kinase Kinase AT5G01850 76.744 9.06e-170 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma03g00296 PK_Tyr_Ser-Thr 1.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00296 - - gmx:100799533 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00296 03 4248412 4258790 Gma03g00296 03 4248412 4258790 ECH