Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00288 ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCGCCACCTCGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGCGATAAGTGCGGTTCTGCTTATGAGCAATCAACGTATTGTGATATGTTTCACTCAAATGATTCTGGTTGGAGAGAATGCACATCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAATTCAGGACTGCAACCTATTGCAAACAATGAAAAGCCTAATGGATCCGGGACATCAAAAGTACAAAATGTCAGTACACAGCAGCAGTACACATCTCTGGCTAACCAATTAACTGTGAGGGGTATGCAAGTAGGGCATTATGCAGAGAATGATGGGCTTCGGTGCTGGTTCAAACCTCATAATGTTGAAACAGATGGGCCTTCTGCAGAAATGAAACCTGAAATTTTACCTTCAGTTGGAGAACTTGGAAACACTTTGATATCACAATTTCATTGTGAGTCTAATGGATCATCTAAGGCTTCCAAAGCAGAGAACTGTAAGGCAGAAACAGAAATGCGAGATATATATGAATCATTGGCACAGACAAATTTGAGTATGACCCTTGCTGCTCCTTTAGGAAATTCAAATCCCTTTCATAGTGCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTCCACTTTTATTGGGGTCAAGGTCTCGTCATCTTTTACCTAAGCCCCCTAGGTCAACTATTGGGACAAGCTTAGAAGCAAATGCTGGCATGGTATCCCAGATTCGTGTGGCAAGACCACCTGCTGAAGGACGGGGAAGGAATCAATTGCTTCCACGTTATTGGCCTAGGATTACCGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCTACGATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACTGCAGTACAGCAGGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGCGCTGTCTAAGAAATGGAACTCAGCTGGTGGTGACATGAATTGGCATAGCATTGACATGCCTGAAAGCAGAAAAAGAGATGGGTTGCCATTGCCACCTGTGATGGTTCCCGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATCGATAGCCAGGATGCGCTGGAGCTGAAACTTACTTGGGAAGAGGCTCAAGATTTGCTCCGTCCTCCTCCAACTGTTAAGCCAAGCATTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAACTGGGGTAAATGAGCAGTGGATGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCTGTTGATGCACTTATTCCCCCAAAGTGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGCTGAATAAAGAATTCAAGAAACAAAGACTGGCAGCAAGCCAGAGACCGGCCCTGGAACGGGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTGGGAGATGATGCAAGTGACTCTGGCAGAACACCAGTTGTTACCACCACAAAACATCCTCGGCATAGACCTGGGTGCTCTTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGGCAATCCGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGTTATCATGGCGGACGAAAGATGAATCAGAAGTAGATAGCACCTCTCGCCATTTAACTCCAGTTGACGGTTTGGAGAATGAAGTAAGGGTGCAAAATGAATTAGATTCAAGGAGTCCAGACGATGCGGTGGCTGAAGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCTGATAGAGAAGATGTGCAAGCTGGGCCGAACAGCTTGAGCATGACGAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGCTTGATAACAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGATAGTGAGGTGAAACACAATGAGGATTGTGGAACCGCTACGGTTATTCATGCGCAGGAAAGCAGCCCTGAAGAGAACAGTGGGCAAGATAAAGAGCAAAACAATTAA 2721 0.4454 MESRSCMNVACATSTTIRWRKGWALRSGEFADLCDKCGSAYEQSTYCDMFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIANNEKPNGSGTSKVQNVSTQQQYTSLANQLTVRGMQVGHYAENDGLRCWFKPHNVETDGPSAEMKPEILPSVGELGNTLISQFHCESNGSSKASKAENCKAETEMRDIYESLAQTNLSMTLAAPLGNSNPFHSAVVDEREQSKTSPLLLGSRSRHLLPKPPRSTIGTSLEANAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAVQQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSAGGDMNWHSIDMPESRKRDGLPLPPVMVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHVFEEYEEPPVFGKRSIFVVRSTGVNEQWMQCDSCSKWRKLPVDALIPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRPALERESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDSTSRHLTPVDGLENEVRVQNELDSRSPDDAVAEAAKGQLDLNCQPDREDVQAGPNSLSMTSLLEEANLPLETYLKQNGLTSLITEQQTNSASNVQAQTTNDSEVKHNEDCGTATVIHAQESSPEENSGQDKEQNN 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00288 906 ProSiteProfiles Zinc finger CW-type profile. 588 638 IPR011124 GO:0008270
Gma03g00288 906 SMART B3_2 322 422 IPR003340 GO:0003677
Gma03g00288 906 Pfam B3 DNA binding domain 322 421 IPR003340 GO:0003677
Gma03g00288 906 MobiDBLite consensus disorder prediction 857 906 - -
Gma03g00288 906 Gene3D - 300 427 IPR015300 -
Gma03g00288 906 MobiDBLite consensus disorder prediction 760 774 - -
Gma03g00288 906 MobiDBLite consensus disorder prediction 857 872 - -
Gma03g00288 906 Pfam CW-type Zinc Finger 593 635 IPR011124 GO:0008270
Gma03g00288 906 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 861 - -
Gma03g00288 906 SUPERFAMILY DNA-binding pseudobarrel domain 319 422 IPR015300 -
Gma03g00288 906 CDD B3_DNA 320 421 IPR003340 GO:0003677
Gma03g00288 906 Gene3D - 591 647 - -
Gma03g00288 906 MobiDBLite consensus disorder prediction 742 776 - -
Gma03g00288 906 ProSiteProfiles B3 DNA-binding domain profile. 322 423 IPR003340 GO:0003677
Gma03g00288 906 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00288 Gma-Chr3 4174683 4183124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00288 1 860 B3 DNA Binding Superfamily AT4G32010 50.865 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma03g00288 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00288 - - gmx:100778833 1838.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00288 03 4174683 4183124 Gma03g00288 03 4174683 4183124 ECH