Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00282 ATGCAAGTTCTTCTTTACATGTCTTTCGTTGTAGTAATATTTTCTCTGTTACTAAACCCTTGCCATTGTCTCAATCTCAAATTATTTAATGGTTCCAAAATTCAAAATGAAGAACAATGGCAAGTAGCAGGAGCTACAATGTTTGGACCACCAGAGGGTGCTGGGTCGGATGGGGGTGCTTGTGGATACATTGACAGTGTGGAAAAACCTCCACTCTCTAAAATGGTATCAGCTGGGGGTCCTTCTCTTTACCTTGGTGGCAGAGGATGCGGGGCATGCTATCAGgtaaaatgcacagaaaaTGCCTTTTGTTCAGGAAACCCTGTGAGCGTGATGATAACTGATGAATGTCCCGGTTGTACCTCACCATCAGTTCATTTTGATCTCAGTGGCACTGCCTTTGGTTCCATGGCAACTCCAGGCCAAGCAGATAATCTTCGCAATGCTGGAGTGCTTAATATTCTCTACAGAAGGGTTGCATGCTCCTTTGGGAACTCTATGGCCTTCACTATCGATAATGGGGCCAACCCATATTATTTTGCTACCGAAATAGAATACGAAAATGGGGGTAGTGACCTTGTGGCCATAGAGTTGAAGCAAGCTAATTCTGACACGTGGCTTCCCATGCAGCGTTCATGGGGTGCAAGGTGGGCTTTGAATTTAGGTTTACAATTACAAGCACCATTATCTATTAAGCTCACAGAACAAGGCAAGGGCTATTACAAGACAATTGTGGCTGATAGTGTAATTCCACATGGCTGGCAACCTGGCCAAGTTTATCGATCTGTTGTTAATTTTTAA 801 0.4307 MQVLLYMSFVVVIFSLLLNPCHCLNLKLFNGSKIQNEEQWQVAGATMFGPPEGAGSDGGACGYIDSVEKPPLSKMVSAGGPSLYLGGRGCGACYQVKCTENAFCSGNPVSVMITDECPGCTSPSVHFDLSGTAFGSMATPGQADNLRNAGVLNILYRRVACSFGNSMAFTIDNGANPYYFATEIEYENGGSDLVAIELKQANSDTWLPMQRSWGARWALNLGLQLQAPLSIKLTEQGKGYYKTIVADSVIPHGWQPGQVYRSVVNF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00282 266 Pfam Expansin C-terminal domain 168 251 IPR007117 -
Gma03g00282 266 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Gma03g00282 266 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Gma03g00282 266 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Gma03g00282 266 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Gma03g00282 266 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Gma03g00282 266 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Gma03g00282 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 262 IPR007117 -
Gma03g00282 266 PANTHER EXPANSIN-LIKE PROTEIN B1 1 266 - -
Gma03g00282 266 SMART dpbb_1 76 156 IPR007112 -
Gma03g00282 266 Gene3D - 163 266 IPR036749 -
Gma03g00282 266 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Gma03g00282 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Gma03g00282 266 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Gma03g00282 266 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Gma03g00282 266 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Gma03g00282 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Gma03g00282 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Gma03g00282 266 SUPERFAMILY Barwin-like endoglucanases 38 163 IPR036908 -
Gma03g00282 266 SUPERFAMILY PHL pollen allergen 166 262 IPR036749 -
Gma03g00282 266 Pfam Lytic transglycolase 77 156 IPR009009 -
Gma03g00282 266 Gene3D - 27 162 IPR036908 -
Gma03g00282 266 PANTHER EXPANSIN-B3 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00282 Gma-Chr3 4054425 4057002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00282 19 266 Expansin Gene Family AT1G65680 54.980 3.78e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00282 - - gmx:100786475 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00282 03 4054425 4057002 Gma03g00282 03 4054425 4057002 ECH