Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00278 ATGGAGAAGCACAAGTGCAAGCTTTGCTTGCGGAGTTTCGCGAATGGAAGAGCGTTGGGAGGTCACATGCGGTCTCACATGATGAACCTACCTGTTCCTCCGAAACAGAGCGAGTTGGTGCCGATTCAACTCAGCTTCGAGGCCGAGTCATCTCCTTCGCAGTCTTCATCTTCTTTCTACGGTCTCAGAGAGAATCCCAAGAAAAACTTTCGCTTCGCAGATCCTGAATTCTCGTTCGCAGCAGCGGAAACTTCCTCCGTGATCCTGCAGGACAGGGAGAGCGAGACCGAGTCGTCGAGGAATCCGACTCGGAGACGATCCAAGAGAGCGTGGCAACAACTCGGTGGCGACAGCGGCGGTGGCGGTGTTTCCGATGAATCAGAAAAAAAGATGATGAAAGTTTTTGACGCCGTAAACAAGAACAACAACGAATCCGCAAGTTCGGTTTCGGACACCACGACGGAGGAAGCCGTGGCATTCTGTCTCATGATGTTGTCTCGCGACAAATGGAAGGAAAACAACAAGTTATTATATGATAACAAGGTCGAGATAGCAGAATATAACGATGATTATgatgacgaggaagacgaagacgaagaagaagaggaagatgaagaAATTTACGAATCCGAAGAGGAACTTAAATCTGTTAAAAAGAGTAACAAAGTGCGAGGAAGATACAAATGCGAGACGTGTGAAAAGGTGTTTCGATCTTATCAAGCTCTTGGAGGCCATCGTGCTAGTCACAAGAAGATCAAGCTCAACAACTGCGAAAACAAGAACAAGAACAACAACAACAACGACGATGAAGCTGAACAACTCGAAGTTCAGCACGTTGTTGTGGTGGAGAAGAAAATTCACGAATGTCCTGTTTGTTTTAGAGTATTTGCTTCTGGTCAGGCTCTGGGAGGACACAAGAGAACACATGTGATTGGTTCTTCAACTGCTGCTGCAACAACAACTGCGACAGCAATCACAACCGTTTCTGTTAGAAACTCTGTTGCAACTGTTTCGGTTAGAACAACTTCTACTGCTAGAGTTGTTGGAGATAGTTTGATAGATCTCAATCTCCCTGCTCCAATGGATGATGATGAAGAGGAGGAGGGGAATGTTAGCCAATTCGAAGACTCAGCTGTTTCGGATGCAGAGTTTGTTAAACTGTGA 1164 0.4442 MEKHKCKLCLRSFANGRALGGHMRSHMMNLPVPPKQSELVPIQLSFEAESSPSQSSSSFYGLRENPKKNFRFADPEFSFAAAETSSVILQDRESETESSRNPTRRRSKRAWQQLGGDSGGGGVSDESEKKMMKVFDAVNKNNNESASSVSDTTTEEAVAFCLMMLSRDKWKENNKLLYDNKVEIAEYNDDYDDEEDEDEEEEEDEEIYESEEELKSVKKSNKVRGRYKCETCEKVFRSYQALGGHRASHKKIKLNNCENKNKNNNNNDDEAEQLEVQHVVVVEKKIHECPVCFRVFASGQALGGHKRTHVIGSSTAAATTTATAITTVSVRNSVATVSVRTTSTARVVGDSLIDLNLPAPMDDDEEEEGNVSQFEDSAVSDAEFVKL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00278 387 SUPERFAMILY beta-beta-alpha zinc fingers 226 309 IPR036236 -
Gma03g00278 387 SMART c2h2final6 4 26 IPR013087 -
Gma03g00278 387 SMART c2h2final6 287 309 IPR013087 -
Gma03g00278 387 SMART c2h2final6 227 249 IPR013087 -
Gma03g00278 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 254 IPR013087 -
Gma03g00278 387 ProSitePatterns Zinc finger C2H2 type domain signature. 289 309 IPR013087 -
Gma03g00278 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gma03g00278 387 MobiDBLite consensus disorder prediction 88 127 - -
Gma03g00278 387 Pfam C2H2-type zinc finger 287 309 - -
Gma03g00278 387 Pfam C2H2-type zinc finger 226 251 - -
Gma03g00278 387 Pfam C2H2-type zinc finger 4 27 - -
Gma03g00278 387 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Gma03g00278 387 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 387 - -
Gma03g00278 387 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gma03g00278 387 MobiDBLite consensus disorder prediction 187 213 - -
Gma03g00278 387 Coils Coil 184 211 - -
Gma03g00278 387 MobiDBLite consensus disorder prediction 187 210 - -
Gma03g00278 387 Coils Coil 254 277 - -
Gma03g00278 387 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 387 IPR044303 GO:0006355
Gma03g00278 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 287 309 IPR013087 -
Gma03g00278 387 Gene3D Classic Zinc Finger 224 309 - -
Gma03g00278 387 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00278 Gma-Chr3 4015864 4017265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00278 1 365 C2H2 Transcription Factor Family AT3G60580 42.091 2.81e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g00278 zf-C2H2_6 2.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00278 - - gmx:100780611 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00278 03 4015864 4017265 Gma03g00278 03 4015864 4017265 ECH