Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00217 ATGGAAGATTCTGATCAACCTGCCAAATCTGCTGAAAACCAGCAAACTGAACAAGTGTGTAGTTTTTTCAGAAAGCCGGTTAATAAAAAGAATTTAAGGAAGCGAACTATTGAAATTGAAGATAATGAGGAGGACTCAAACAATGAAACTTCTCTGTTGCATATTCAGAAGAAAACCTTAAAGGCTGACAATAAGTTGTACTTTTCCACCGGCTCTTCAAAAAGCTCTGCATCTGCTGAACCAAGTGAAGAATCTGGAAAAACAGTCTTTCAATTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAATTCTAGAGACCGAGACTGAGTTTTCAAAAGATGCTCGTGCCATCCGCGAAAGAGCTCTTAAGCAAGCAGAGGAGAGTCTGAAAGGGAAAAGTGCAAGCTCTGAGGATAAAAAATTATATAAGGGAATGAACAGTTACAAAGACTACAAGGCTGGCTTTCGTAGGGAGCAAACAATTGCTAGTGAAAAAGCTGGAGGGTCACATGGTCCTCTTAGGGCTTCAGCTCATATTAGAGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAACAAAGGAAAATGAGATTGGCTGCAGGAGAGGATGCAGATGAGGAGGAGGGTGCTAATTTGACTGATGAAGATGATGAGGATTCGCTACCATTTGCCTGTTTCATTTGTAGAAACTCTTTTGTGGATCCTGTAGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATTCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGGCCGAGGATAAATCATAA 993 0.4058 MEDSDQPAKSAENQQTEQVCSFFRKPVNKKNLRKRTIEIEDNEEDSNNETSLLHIQKKTLKADNKLYFSTGSSKSSASAEPSEESGKTVFQFESSKEIQVQHDSKATAILETETEFSKDARAIRERALKQAEESLKGKSASSEDKKLYKGMNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKQRKMRLAAGEDADEEEGANLTDEDDEDSLPFACFICRNSFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNQPTLGIFNVAHEIRRKMAEDKS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00217 330 PANTHER ZINC FINGER PROTEIN 183 10 329 IPR039971 -
Gma03g00217 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 327 IPR013083 -
Gma03g00217 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Gma03g00217 330 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Gma03g00217 330 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Gma03g00217 330 SMART ring_2 270 307 IPR001841 -
Gma03g00217 330 MobiDBLite consensus disorder prediction 8 22 - -
Gma03g00217 330 MobiDBLite consensus disorder prediction 243 262 - -
Gma03g00217 330 SUPERFAMILY RING/U-box 269 312 - -
Gma03g00217 330 ProSitePatterns Zinc finger RING-type signature. 285 294 IPR017907 -
Gma03g00217 330 CDD RING-HC_RNF113A_B 268 308 - -
Gma03g00217 330 MobiDBLite consensus disorder prediction 69 89 - -
Gma03g00217 330 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 10 329 - -
Gma03g00217 330 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Gma03g00217 330 Gene3D - 190 224 - -
Gma03g00217 330 MobiDBLite consensus disorder prediction 1 22 - -
Gma03g00217 330 Pfam Zinc finger, C3HC4 type (RING finger) 269 311 - -
Gma03g00217 330 ProSiteProfiles Zinc finger RING-type profile. 270 308 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00217 Gma-Chr3 2856877 2859316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00217 7 330 C2H2 Transcription Factor Family AT1G01350 67.901 7.66e-165 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma03g00217 zf-C3HC4_3 3.3e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00217 K13127 - gmx:100817146 649.818