Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00195 ATGGGCCATAACTGCCAGTTAAATTTTCTTGTGTGTGAATGTGTTTCAATCCAGAATTTTTTAGCACTATGTGCAAGTGGTTACTACGATGGAACTATATTTCACCGCAACATTAAGGGTTTTATGATTCAAGGTGGAGACCCAACTGGAACTGGCAAAGGGGGAACTAGTATATGGGGCAAGAAATTTAACGATGAGATAAGAGAATCTCTGAAGCACAATGCAAGAGGAATATTGGCAATGGCCAATAGTGGTCCAAATACTAATGGAAGCCAATTTTTCTTAACTTTCGCAAAGCAACCCCATTTAAATGGGCTATACACTGTGTTTGGCAAAGTAATTCATGGATTTGAAGTGCTCGATCTCATGGAGAAGACACAAACAGGGGCAGGGGACCGACCACTTGCGGAGATTAGGCTCAATCGTGTAACAATACATGCTAATCCACTTGCTGGTTAG 459 0.4139 MGHNCQLNFLVCECVSIQNFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFLTFAKQPHLNGLYTVFGKVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00195 152 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 17 144 IPR002130 GO:0000413|GO:0003755
Gma03g00195 152 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 16 145 IPR002130 GO:0000413|GO:0003755
Gma03g00195 152 SUPERFAMILY Cyclophilin-like 17 149 IPR029000 -
Gma03g00195 152 CDD Cyclophilin_PPIL3_like 10 145 - -
Gma03g00195 152 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 29 46 IPR020892 GO:0003755|GO:0006457
Gma03g00195 152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 34 46 IPR002130 GO:0000413|GO:0003755
Gma03g00195 152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 77 92 IPR002130 GO:0000413|GO:0003755
Gma03g00195 152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 120 IPR002130 GO:0000413|GO:0003755
Gma03g00195 152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 104 IPR002130 GO:0000413|GO:0003755
Gma03g00195 152 PIRSF Peptidylpro_ismrse 9 149 IPR024936 GO:0003755
Gma03g00195 152 Gene3D - 15 152 IPR029000 -
Gma03g00195 152 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 12 151 IPR044666 -
Gma03g00195 152 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 12 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00195 Gma-Chr3 2403552 2405093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00195 18 149 U-box Gene Family AT5G67530 54.545 1.03e-48 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00195 K12734 - gmx:100777417 275.789