Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00194 ATGTCGGTGACTCTGCACACAAACCTAGGCGACATCAAATGCGAAATCTTCTGCGACGAGGTCCCCAAATCCTCCGAGGTATGGTTATCTTCTCCCCTTCATTTCAATTGCTTTCAGGAAAAGACTCAAAAACCCAACTCGTTCGGGCATAGTGGGGACCACTATGACTCGCTATTCTCGTCTATAGTCATGTTATGCCCTCTCAAAACCCGTCACAGAGTACCGTTGCAACTATCATTCAGACTTTGTTCCAAATTCTTCCACGCACTCAAACATGACCACCACCAGTTCGACTTTATTCCCCACCCAAATGCTGCCTCAGTTAACCATTCCATGCTCAACTGTTTGCACAGCCGCCTTCCCTTTCAAGCTCTCACCGCATTCAAGAACCATTTCCAGTTGCATTCTCTTGAAAATGTTGATGAGGTTACCGTTGCCTTGTCCCTCAAGGCATGTCAGGGAGAGTCAAAACTCGGGTGTCAAATCCACGGATTTGCGGTATGTAGTGGGTTTGTGTCGTTTGTCACGGTGTCAAATTCGCTCATGAAAATGTACTGCAAGTCTGGGAATTTTGGGAAGGCTTTGATTGTGTTTGAGAATTTGAGTCATCCTGACATAGTGTCTTGGAATACTGTGCTTTCGGGGTTTGAGGAGAGTGTGGATGCTTTGAATTTTGCACGGTCTATGCATTATTGTGGGATAGCTTTTGATCCGGTGACATATACTTCTGCTCTTGCATTTTGTTGGGGTGATCATGGGTTTTTATTTGGGTGGCAATTGCATTCTCTTGTGGTTAAGTGTGGACTTGGTTGTGAAGTTTTTATAGGGAATGCACTTGTAACTATGTATTCAAGGTGGGGGATGTTGGATGAGGCTAGGAGAgtgtttgatgaaatgcctgaaagagatttggtttcgtggaatgcaatgatttcagggtatgctcaagagggcaaatgttatgggttagaagcagttttattgtttgtcaacatgGTAAGACATGGTATGTTAATTGATCATGTTTCACTTACAGGTGCAGTTTCTGCTTGTGGTCATATGAAAAACTTAGAGCTTGGGAGGCAGATACATGGTTTGACCCAGAAAGTGGGATATGGAACACATGTTTCAGTTTGCAATGTTTTGATGTCAACTTATTCAAAATGTGAGGTCCCTAAAGATGCAAAAGCTGTTTTTGAGAGCATTAGTAATCGGAATGTAGTGTCTTGGACGACAATGATTTCTATTGACGAAGAAGATGCAGTGTCTCTCTTCAATGCCATGAGAGTTAATGGCGTGTATCCAAATGATGTTACATTTATAGGATTAATACATGCTGTAACAATCAGGAATTTAGTGACAGAAGGTCTAACGATTCATGGGCTATGCATAAAAAGCTGCTTTTTGTCGGAACAAACTGTCTCCAACAGCTTCATTACCATGTATGCCAAGTTTGAGTGCATTCAAGAATCAACCAAGATTTTTGAGGAGCTTAACTGTCGAGAAACAGTATCATGGAATGCATTAATTTCAGGGTATGCTCAAAATGGCTCATATAAAGAAGCTTTGCTCACATATTTGTCTGCAGTTAAGGAGATAAAGCCCAATCAATACACATTTGGTAGTGTTTTAAATGCTATTGCTGCGGCTGAGGATATATCATTGAACCATGGGAAAAGTTGCCATTCTCACTTGCTCAAACTTGGTTTAGGCACTGATCCAATTGTTTCAGGGGCTCTGCTTGACATGTATGGCAAGCGTGGTGACATAATTGAGTCTCAAAGAGTGTTCAATGAGACACTTGAACGAACCCAGTTTGCTTGGACAGCCATAATATCTGCCTATGCCCGCCATGGAGACTTTGAGTCAGTGATGAGTTTGTATACAGAAATGGAGAGGGAAGGAATCAATCCTGACTCCATCACTTTCCTTTCTGTTTTGGCTGCATGTTGTAGAAAGGGCATGGTTGATGCCGGCCATAGAGTCTTTGACTCTATGGTGAAGAAACATTCAATTGAGCCAACCTCTGAGCATTATTCTATTATGGTGGACATGTTGGGCCGTGTTGGACGACTAGATGAGGCAGAAGAGTTGATGCACCAGATTCCAGGAGGGCCTGGATTGTCAGTGTTGCAAAGTTTGCTTGGGTCTTGTAGATTACATGGGAATATGGAGATGGCTGAGAAGGTTGTTGGTAGATTGATAGAAATGGATCCTGCAAGTTCAGGTCCATATGTGTTAATGGCAAACTTGTATGCTGAGAAAGGAAAGTGGGAGAAAGTTGCTGAAGTGCGAAGAGGGATGAGAGGGAGGGGAGTAAAGAAGGAAGTCGGATTTAGTTGGGTGGATGTTTCTAATGTTGATTCCTTATATTTGCATGGTTTCTCCTCTGGGGATAAGTCACATCCAGAGTCTGAGAATATTTGTAAAATTGCCGAGTTTCTGGGACTGCAAATGAAAATTTTGAAAGAGAACAGAGAAAGGGAAGGAGAGTGGTATAATGAGTAA 2508 0.4063 MSVTLHTNLGDIKCEIFCDEVPKSSEVWLSSPLHFNCFQEKTQKPNSFGHSGDHYDSLFSSIVMLCPLKTRHRVPLQLSFRLCSKFFHALKHDHHQFDFIPHPNAASVNHSMLNCLHSRLPFQALTAFKNHFQLHSLENVDEVTVALSLKACQGESKLGCQIHGFAVCSGFVSFVTVSNSLMKMYCKSGNFGKALIVFENLSHPDIVSWNTVLSGFEESVDALNFARSMHYCGIAFDPVTYTSALAFCWGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMYSRWGMLDEARRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPKDAKAVFESISNRNVVSWTTMISIDEEDAVSLFNAMRVNGVYPNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSCFLSEQTVSNSFITMYAKFECIQESTKIFEELNCRETVSWNALISGYAQNGSYKEALLTYLSAVKEIKPNQYTFGSVLNAIAAAEDISLNHGKSCHSHLLKLGLGTDPIVSGALLDMYGKRGDIIESQRVFNETLERTQFAWTAIISAYARHGDFESVMSLYTEMEREGINPDSITFLSVLAACCRKGMVDAGHRVFDSMVKKHSIEPTSEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRLHGNMEMAEKVVGRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRRGMRGRGVKKEVGFSWVDVSNVDSLYLHGFSSGDKSHPESENICKIAEFLGLQMKILKENREREGEWYNE 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00194 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Gma03g00194 835 PANTHER OS07G0578800 PROTEIN-RELATED 616 828 IPR045215 GO:0003723|GO:0009451
Gma03g00194 835 TIGRFAM PPR: pentatricopeptide repeat domain 607 640 IPR002885 -
Gma03g00194 835 TIGRFAM PPR: pentatricopeptide repeat domain 504 526 IPR002885 -
Gma03g00194 835 TIGRFAM PPR: pentatricopeptide repeat domain 277 305 IPR002885 -
Gma03g00194 835 TIGRFAM PPR: pentatricopeptide repeat domain 641 675 IPR002885 -
Gma03g00194 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 339 IPR002885 -
Gma03g00194 835 Gene3D Tetratricopeptide repeat domain 658 788 IPR011990 GO:0005515
Gma03g00194 835 Gene3D Tetratricopeptide repeat domain 356 470 IPR011990 GO:0005515
Gma03g00194 835 Gene3D Tetratricopeptide repeat domain 105 249 IPR011990 GO:0005515
Gma03g00194 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 302 IPR002885 -
Gma03g00194 835 Gene3D Tetratricopeptide repeat domain 562 657 IPR011990 GO:0005515
Gma03g00194 835 Gene3D Tetratricopeptide repeat domain 258 355 IPR011990 GO:0005515
Gma03g00194 835 Gene3D Tetratricopeptide repeat domain 471 561 IPR011990 GO:0005515
Gma03g00194 835 SUPERFAMILY TPR-like 503 761 IPR011990 GO:0005515
Gma03g00194 835 PANTHER OS07G0670000 PROTEIN 616 828 - -
Gma03g00194 835 PANTHER OS07G0670000 PROTEIN 532 618 - -
Gma03g00194 835 Pfam PPR repeat family 605 652 IPR002885 -
Gma03g00194 835 PANTHER OS07G0578800 PROTEIN-RELATED 88 531 IPR045215 GO:0003723|GO:0009451
Gma03g00194 835 PANTHER OS07G0578800 PROTEIN-RELATED 532 618 IPR045215 GO:0003723|GO:0009451
Gma03g00194 835 Pfam PPR repeat 504 523 IPR002885 -
Gma03g00194 835 Pfam PPR repeat 305 336 IPR002885 -
Gma03g00194 835 Pfam PPR repeat 277 303 IPR002885 -
Gma03g00194 835 Pfam PPR repeat 179 199 IPR002885 -
Gma03g00194 835 Pfam PPR repeat 678 701 IPR002885 -
Gma03g00194 835 Pfam E motif 721 783 IPR046848 -
Gma03g00194 835 PANTHER OS07G0670000 PROTEIN 88 531 - -
Gma03g00194 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 674 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00194 Gma-Chr3 2400081 2403057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00194 137 808 Glycoside Hydrolase AT3G49170 31.124 5.12e-107 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00194 - - cam:101513383 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00194 03 2400081 2403057 Gma08g03150 08 48232917 48235697 PCT