Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00168 ATGGGTAGAGGGAGAGTTGAGTTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTAACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCTTATGAACTCTCAGTTCTCTGTGATGCTGAGGTTGCCCTCATCATTTTCTCAAGCCGTGGAAAGCTCTATGAATTTGGAAGTGTTGGGACTACCAATACTATTGAGCGATACCAACGTAGCTCTTTTACTCCTCAAGACGAACACGTTGAATGTGAAACTCAGAGCTGGTACCAAGAAGTTTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAGGACCCAGAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAACATAAAGGAGCTGCAGAATATTGAGAAACAGCTTGAAGGGGCTTTAGCACAAGCAAGACAAAGGAAGACACAAATCATGATTGAACAAATGGAAGAGCTTCGCAGAAGGGAGCGCCATCTTGGAGACATGAATAAGCAACTTAGACTCAAGCTTGAAGCAGAGGGATTTAATCTTAAAGCTACGGAAAGCTTGTTGAGCTTTACTTCAGCTGCTGGAAACAGTGGCTTTCACTTTCAGCAGCCTCCTCAAACCAATCCTATTGATTACCAGCAGCCAGAACCCTTTTTGCAAATAGGGTACCATCAATATGTTCAATCTGAGGCATCTAATGTTCCAAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATCCTTTGA 738 0.4309 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTNTIERYQRSSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNIEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLEAEGFNLKATESLLSFTSAAGNSGFHFQQPPQTNPIDYQQPEPFLQIGYHQYVQSEASNVPKSMACETNFMQGWIL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00168 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gma03g00168 245 Coils Coil 119 142 - -
Gma03g00168 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma03g00168 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma03g00168 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma03g00168 245 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma03g00168 245 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Gma03g00168 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma03g00168 245 PANTHER MADS BOX PROTEIN 1 230 - -
Gma03g00168 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma03g00168 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma03g00168 245 Coils Coil 148 168 - -
Gma03g00168 245 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Gma03g00168 245 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma03g00168 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 230 - -
Gma03g00168 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00168 Gma-Chr3 2059358 2066281 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00168 1 245 MADS-box Gene Family AT2G45650 64.567 1.42e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma03g00168 K-box 5.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00168 K09264 - gmx:100810549 490.345