Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00167 ATGGTGAGGGGAAAGACTCAGATAAAGCGTATAGAGAACGCCACAAGCAGGCAAGTAACTTTCTCAAAGCGGCGAAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTTCAAGTGGGAAGCTCTATGAATTTGCTAGCTCCAGCATACAGTGTTCAATTGAACGATACCGCAGGCATACCAAGCATGATAATCCAACTACATTCAGATCAGTTGAACAAAATATGCAGCATTTGAAGCAAGAGGCAGCAAACATGATGAAGAAGATTGGCCTTCTTGAAGCTGCAAAACGGAAGTTCTTGGGGGAAGGGTTGGGGGCTTGCTCCATTGAGGAACTGCAATGGATAGAACAACAGTTGGAGAGGAGTTTAAGTAATGTTAGAACAAGAAAGATCCAGGTTTTCAAGGAACAAATCGAGCAACTAAAAGAAAAGGAAAAAGTCCTACTTGAtgaaaatgtcaagctcactgaaaatggcaggctctctgaGAAGCATGGAATCAATCTACAAACAGAAACAAAGAAACAGAATGTGAATCAACCCCAATACAATGCAGGTAGTCCAAGTTCAGATGTGGAGACCGAATTGATCATTGGACTTCCGGATACAAGAACAAGGCGCATCGTTCATCAGCTACCACAGCACCAAAATGGGCTTGAACCAAATCAAAGAAAAGAGCAACCAGGCGTTCCAAAAGAGGAACTTTGCAACCAGCAGCATGAAGAGTCACACTAA 774 0.4096 MVRGKTQIKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSSGKLYEFASSSIQCSIERYRRHTKHDNPTTFRSVEQNMQHLKQEAANMMKKIGLLEAAKRKFLGEGLGACSIEELQWIEQQLERSLSNVRTRKIQVFKEQIEQLKEKEKVLLDENVKLTENGRLSEKHGINLQTETKKQNVNQPQYNAGSPSSDVETELIIGLPDTRTRRIVHQLPQHQNGLEPNQRKEQPGVPKEELCNQQHEESH 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00167 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma03g00167 257 MobiDBLite consensus disorder prediction 177 206 - -
Gma03g00167 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma03g00167 257 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677|GO:0046983
Gma03g00167 257 PANTHER MADS BOX PROTEIN 1 216 - -
Gma03g00167 257 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Gma03g00167 257 MobiDBLite consensus disorder prediction 177 204 - -
Gma03g00167 257 ProSiteProfiles K-box domain profile. 88 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma03g00167 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma03g00167 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma03g00167 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma03g00167 257 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma03g00167 257 MobiDBLite consensus disorder prediction 225 257 - -
Gma03g00167 257 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma03g00167 257 PANTHER MADS-BOX PROTEIN SOC1 1 216 - -
Gma03g00167 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma03g00167 257 Coils Coil 144 171 - -
Gma03g00167 257 MobiDBLite consensus disorder prediction 239 257 - -
Gma03g00167 257 Coils Coil 81 108 - -
Gma03g00167 257 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00167 Gma-Chr3 2028286 2056107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00167 1 159 MADS-box Gene Family AT2G45660 77.358 7.85e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma03g00167 K-box 3.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00167 - - gsj:114405819 470.7