Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00163 ATGGACAATTATGGTTCTTTACAACATCCATATGGGTATCCAAACCCTCCTCATGATCTATATGCACAACCACCATATCCATATCCATATCCACCAAACCCTCCTTATACTAACAACTTTAACTACTCATACCCCCCACCTCCTCCACCACCACACTCCTCATCTCCTTATTCTAGCCACATAGACTATTCCTCATACCCTCCTCCTCCATCTACCTCATCACATGGCTCCTTTGACTATCCTATGCCTCAACCACCCCACACTTATCTTTACCCTAATGAGTTTTATAGTTATTCTAGCAACTCCTCCTCAAGTTTGGACCAGGAGGATCCTTCTAGAGTTTCAGATAATTCTGATGACTCAGTGCATAGTCAGAGTTTGCAGATTGTGCCGGCTCAGCTCAAAGGGTCTCTGAGAGTTATGCTCCTCCATGGGAATTTAGATATTTGGGTTCATGGAGCCACAAACCTTCCTAACATGGACATGTTCCACAAGACGTTGGAAGACATGTTCGGTAGGTTGCCCGGTAATGTTCAACATTTCTATAATGTTCCTGTTGCACATCATGCAGCTGAAGTTCATTTTGTTGTCAAGGACAGTGATGTGGTGGGTTCACAGCTCATTGGCGTTGTGGCAATTCCTGTGGAACAAATATACTCGGGGAAGAAGCTACATGGGACCTACCCTATCCTGAACAGCAATGGTAAGCCTTGTAAGCCAGGTGCTGTTTTGACAGTATCCATTCAGTATATTCCAATGGAGAAACTTACCATTAAAGGTGGAACGGTTACTCTATATCAAGATGCTCATGTTCCAAATGGTTGCCTCCCTAATGTTGTGCTTGAAAATGGTATGTATTGTGCTCATGGACAGTCTAAATCATCAGAGGAGGGAGTAAGAGTGCTTCTCCTTGTTTGGGACGACCCTACATCAAGAAACATTCTAGGTTACAAAGTGGATGGTGTGATGGCAACTCGTGATGAGGAAACTAGACGATTTTTCAAGCACTCTTCTATGCAGGTGCTGCTTTGTCCTCGCATTGCTGGAAAACGAAATAGCTGGGTCAAACAACAGGTTTGCTCTGGAACAATATATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAAAAGAAAAATAGTAGCATTTGTTGGCGGACTTGATTTGTGTGATGGGAGATATGATACTCCCCACCTTCCTATGTTTAGGACACTTCAGACACTGCATAAGGATGACTATCACAACCCTACTTTCACGGGTAATACCGGTGGTTGTCCACGGGAGCCATGGCATGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTACGATATTTTGAAAAACTTTGAGGAGCGCTGGTTAAGAGCCGCAAAACCAAAAGGGATTCAAAAAATCCGAGGTATTATTAGTGCATCTAATGCTCCTAGTGTCGGTGATGATAATCCTGAGTCATGGCATGTTCAGatattccgttcaattgattcaaattctgtcaaggggtttccaaaggagccaaaaaatgcatctagcatgaatcttgtatgtgggaagaatgtgctgattgacatgagcatacatacagcatatgtaaaggccattcgtgttgcacaacattacatttatatagagaatcaatatttcattgggtcttcatataattggagtcaacataaagaccttggtgctaataatttaattcctatggaaattgcactgaagattgctgcaaagataagggcaaacgagagatttgcagtgtacattgtcattccaatgtggcgccagagggtgttccaactggtgctgccactcaaagaattctattttggcagcataaaacaatgcaaatga 1866 0.3435 MDNYGSLQHPYGYPNPPHDLYAQPPYPYPYPPNPPYTNNFNYSYPPPPPPPHSSSPYSSHIDYSSYPPPPSTSSHGSFDYPMPQPPHTYLYPNEFYSYSSNSSSSLDQEDPSRVSDNSDDSVHSQSLQIVPAQLKGSLRVMLLHGNLDIWVHGATNLPNMDMFHKTLEDMFGRLPGNVQHFYNVPVAHHAAEVHFVVKDSDVVGSQLIGVVAIPVEQIYSGKKLHGTYPILNSNGKPCKPGAVLTVSIQYIPMEKLTIKGGTVTLYQDAHVPNGCLPNVVLENGMYCAHGQSKSSEEGVRVLLLVWDDPTSRNILGYKVDGVMATRDEETRRFFKHSSMQVLLCPRIAGKRNSWVKQQVCSGTIYTHHQKTVIVDADAGNNKRKIVAFVGGLDLCDGRYDTPHLPMFRTLQTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDILKNFEERWLRAAKPKGIQKIRGIISASNAPSVGDDNPESWHVQIFRSIDSNSVKGFPKEPKNASSMNLVCGKNVLIDMSIHTAYVKAIRVAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAAKIRANERFAVYIVIPMWRQRVFQLVLPLKEFYFGSIKQCK 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00163 621 Gene3D Endonuclease Chain A 492 605 - -
Gma03g00163 621 SUPERFAMILY Phospholipase D/nuclease 517 603 - -
Gma03g00163 621 Pfam Phospholipase D Active site motif 364 398 IPR001736 GO:0003824
Gma03g00163 621 PANTHER PHOSPHOLIPASE D ALPHA 1 67 178 - -
Gma03g00163 621 PANTHER PHOSPHOLIPASE D ALPHA 1 179 291 - -
Gma03g00163 621 MobiDBLite consensus disorder prediction 1 83 - -
Gma03g00163 621 Gene3D Endonuclease Chain A 288 482 - -
Gma03g00163 621 PANTHER PHOSPHOLIPASE D 179 291 IPR015679 -
Gma03g00163 621 PANTHER PHOSPHOLIPASE D 67 178 IPR015679 -
Gma03g00163 621 PANTHER PHOSPHOLIPASE D 292 601 IPR015679 -
Gma03g00163 621 Pfam C2 domain 182 230 IPR000008 -
Gma03g00163 621 MobiDBLite consensus disorder prediction 56 79 - -
Gma03g00163 621 MobiDBLite consensus disorder prediction 100 125 - -
Gma03g00163 621 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 363 398 IPR001736 GO:0003824
Gma03g00163 621 SUPERFAMILY Phospholipase D/nuclease 296 463 - -
Gma03g00163 621 PANTHER PHOSPHOLIPASE D ALPHA 1 292 601 - -
Gma03g00163 621 MobiDBLite consensus disorder prediction 17 55 - -
Gma03g00163 621 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 138 254 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00163 Gma-Chr3 1963958 1968048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00163 84 602 Phospholipase D Gene Family (Wang group) AT2G42010 61.250 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00163 K01115 - gmx:100805294 866.685