Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00162 ATGGCTGATGAAGCTTCTGGAGATGTTGATCTAAGGTTGGGAGAGCCCAAGGGGCCTAAAGAGGAGCCCGAGACGGAGGAGGGGTCCGCCATACGTGTGATGCCGGTGGCGGTGCACGTGCCGGCGGGGATGTCTATGTCCATGTCCAAGGCTCTGGCCCAGGCCCAAGCCCAGGCCCAACCACAAAAGCGGGCCTccaccaaagaccgccacaccaaagtagaggggcgaggcagaaggatccgaatgcccgccacgtgtgcggcgaggatcttccagctgacccgagagctcggtcataaatccgacggcgaaacCATCCGGTGGCTCCTCGAGCACGCCGAGCCCGCCATCATCGCCGCCACCGGCACCGGCACAGTCCCCGCCATCGCGATGTCCGTCAATGGAACGTTAAAGATTCCGACCACCTCACCTTCCGATCAAGAACCCGGAGAGCCGCCCGAGAGGAAGAAGCGCAAACGACCCGCGAATAGCGCCTACGTGGACATAAACGGCGCCGCCGTTTCGGTCTCGGCCGGGCTCGCAAGCTCTATTATTAATAATAATAACCAAAACGCAGCAACGACGATGACGACAACGATGGCAATTCCGCAACATACAGCAATTCCGTTGCCGCAAGGAATGGTTCCCGTGTGGGCCATCCCTTCAAACGCCGTCGTTCCGGCTGCAGGAGCTTTTTTTGTGGTTCCTCAAACGGCGTCGTTTCAGCATCAACCTCAGTTTTTCACCATAGCGAGACCTATCTCCGAGTTTGTCTCTTCCATGGTCACACCCGTCGTTCAGCTTCAACCAACCTCGATAAACTCTTCCACCAACACTAACTCTAACGCTTCCTCCACTGCGCCGTCGTCGAAGTCCCCGGCGAGAGCCACCGTCATGGCTCCGACAACCACCACCACCACCACGAGGCAGATGCTGAGAGATTTCTCGTTGGAGATTTACGACAAGCAGGAGCTGCAGTTCATGTCGCGCGCGTCTTCCAAGCATTGA 1011 0.5074 MADEASGDVDLRLGEPKGPKEEPETEEGSAIRVMPVAVHVPAGMSMSMSKALAQAQAQAQPQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPSDQEPGEPPERKKRKRPANSAYVDINGAAVSVSAGLASSIINNNNQNAATTMTTTMAIPQHTAIPLPQGMVPVWAIPSNAVVPAAGAFFVVPQTASFQHQPQFFTIARPISEFVSSMVTPVVQLQPTSINSSTNTNSNASSTAPSSKSPARATVMAPTTTTTTTRQMLRDFSLEIYDKQELQFMSRASSKH 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00162 336 MobiDBLite consensus disorder prediction 273 306 - -
Gma03g00162 336 MobiDBLite consensus disorder prediction 138 165 - -
Gma03g00162 336 Pfam TCP family transcription factor 66 157 IPR017887 -
Gma03g00162 336 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
Gma03g00162 336 MobiDBLite consensus disorder prediction 150 164 - -
Gma03g00162 336 MobiDBLite consensus disorder prediction 51 77 - -
Gma03g00162 336 MobiDBLite consensus disorder prediction 1 28 - -
Gma03g00162 336 PANTHER TRANSCRIPTION FACTOR TCP9 18 336 - -
Gma03g00162 336 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 336 IPR005333 GO:0003700
Gma03g00162 336 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00162 Gma-Chr3 1950534 1952142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00162 47 335 TCP Transcription Factor Family AT2G45680 53.030 8.83e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma03g00162 TCP 7.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00162 - - gmx:100814309 529.25