Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00150 ATGTGGAGACTCGATCGCAACCAAGCCCTCGAGTTAGTTTTTAATTGGGGTTTCTATCGCAAACCCTCACTCCCTTCATTAAGGTCGCGCGCGAAGGGATTTCGAAGCTTCGGAAGGAAAAAAAAAAAGATGAAACCTGTTTTCTGCGGAAACCTGGATTTCGACGCGCGTCAATCCGACGTGGAGAGGCTCTTCAGAAGATACGGCAAGGTTGATAGAGTCGACATGAAATCCGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCCGTTAATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGAATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGATCGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCCCCACCCCGAGATAGGTCTCGATCTTGA 888 0.4538 MWRLDRNQALELVFNWGFYRKPSLPSLRSRAKGFRSFGRKKKKMKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVNARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYDRAESPINGRYDSRSPPPRDRSRS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00150 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 210 IPR000504 GO:0003723
Gma03g00150 295 MobiDBLite consensus disorder prediction 266 295 - -
Gma03g00150 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 203 IPR000504 GO:0003723
Gma03g00150 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 106 IPR000504 GO:0003723
Gma03g00150 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 117 IPR000504 GO:0003723
Gma03g00150 295 MobiDBLite consensus disorder prediction 213 295 - -
Gma03g00150 295 MobiDBLite consensus disorder prediction 115 129 - -
Gma03g00150 295 Gene3D - 130 275 IPR012677 -
Gma03g00150 295 SUPERFAMILY RNA-binding domain, RBD 47 211 IPR035979 GO:0003676
Gma03g00150 295 MobiDBLite consensus disorder prediction 213 235 - -
Gma03g00150 295 MobiDBLite consensus disorder prediction 115 137 - -
Gma03g00150 295 PANTHER - 47 257 - -
Gma03g00150 295 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 47 257 - -
Gma03g00150 295 SMART rrm1_1 140 206 IPR000504 GO:0003723
Gma03g00150 295 SMART rrm1_1 46 113 IPR000504 GO:0003723
Gma03g00150 295 Gene3D - 37 129 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00150 Gma-Chr3 1820198 1829253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00150 47 205 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 4.59e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00150 K12893 - gmx:100797778 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00150 03 1820198 1829253 Gma03g00150 03 1820198 1829253 ECH
Gma07g00707 07 7420022 7436441 Gma03g00150 03 1820198 1829253 ECH