Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00127 ATGCAGTCTCTTTGTTCAGCAAAGACAAATAAATACACTTACGAGAAAACGTTAAACGCGACGGTGCCAGCAACAACAGCAAACTCTTCTCAGAGAAAGCCGAAGAGAAAACGAGCTTCAGCTAGAAGCGATCCCGAACTCGACCGTCTCGACGCGCTTCCGTGGAACTCCGCTCTTCCTCCTCAAAACGACGACGACGACGACGCTTTCTCCTTGTTCATTGGCTCCAACGaacttgaaggagGTTTTCTTTCGCTCGAGGAGGTTGATGAGGCTGAGTATGGTTTGAGTATTCCTGAACCTGAAGTTAACAAGAGGAAGACGAAAAAGAAGAAATCTGAACAGAACGAAAATTTGAAGAAGCAGCAGCAGGATGGAATTGATGGTGCTTGTAGCAATGCGGTGGTCGAAGCAGAGTTGGATGAGAGTGTGAAGTCTAAAGAGAAGAAGAAAAAGAAGAATAAGACAACGAACAAGAAGAAGGATGCCACAGTAGACCAGACAGTTGAGCAGTCAGATGCTGGCTTAGATACTAATGTGAAGGATGATGGTGGGGAAGAGGATGTTGATGAAACTGAATGTTATGCATGGAATGAGTTGAGGCTTCATCCGCTCCTAATGAAAGCAATATGCAAGCTTGGCTTCAAGGAACCAACACCAATTCAGAAGGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCTGAGACAGGATCCGGTAAAACACTTGCGTTTGGTTTGCCCATTTTGCAACGCCTTTTGGAGGAGAGAGAGAAGGCTGCAAATATGGATGAAGAAAGGGGTGAAGAACCTGAAAAGTATGCTCCTACTGGTTTTTTGAGGGCTCTTATTATTGCTCCGACTAGAGAACTAGCACTTCAGGTCACTGATCACCTGAAAGCAGTAGCCAAGCATATTAATGTTAGGGTGATCCCTATAGTTGGGGGAATTTTAGCAGAAAAGCAGGAGAGACTTTTAATAGCTAAGCCTGACATCGTTGTCGGGACTCCAGGAAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCATTGTCTTTCTTTGTGCTTGATGAGGCTGATCGTATGGTACAAAATGGTCATTTTAAGGAGTTGCAGTCAATAATTGACATGCTTCCCATGTCCATCAATTCCACCGAAGATAATTCTCAACATAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTTGCACTATCTTCTGATTTTCGCAAGAAGCTAAAACGTGGCTCAATTCAACAAAAGCAATCATTGACAGATGGATTGAATTCTATTGAAACTCTTTCTGAGCGTGCAGGAATGAGACCGAATGCTGCAATTATTGATCTTACTAATCCGTCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGATGCCTATTTGTATTATATTTTGACTGTCCATGGACAAGGCCGCACAATACAGCGTGCACGTTTGAAGGCCATGGATCGCTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTTCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGAAGGTTGTAGTATTGCTTTAATATCATCAAGAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCCAATGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTATGTGCCAGAGGTCCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACAAGGAAGGAATCACAGGAAAAGGCTGAGAAAAACTGGTTTGATCGGAATGCTAGCTCAGTGGAATTAGTCACAGAAAATTATGACAGTGAAGAGGAACAAGTGAACAAACATAAGCAAATGAAGATCAGCTCTAGACAATTGAAGAAATTGCAGGAGGAGCTCAAAATGCTGATTTCACGTCCATTACAATCAAAAACATTTTCGCATCGATATTTAGTAGGGGCTGGTGTCACACCCCTCATGCAGGAGCAATTGCAACAATTAGCAAGGCAAAAATTAAGTGATCACCAGGGTTCAGGACTTGGCAAAAAGGGAAAATTGGTAGTGATTGGTCAAGATTGTGTGGACGCACTTCAGGCACTTCGAAGTGCAGGTGAAGAGGTGCGAATGGATGTCAAAGATTTGGCAGGAAAACAGAGAAATATGCAGAATTTAAAAAGAAAGCGAAAAGAGGAGAAAAAGCGTTTGCGTGATCAGCGTAGAAAGCAGAAGAAAAAGCTAAAATACGGGAATGAATAG 2361 0.4202 MQSLCSAKTNKYTYEKTLNATVPATTANSSQRKPKRKRASARSDPELDRLDALPWNSALPPQNDDDDDAFSLFIGSNELEGGFLSLEEVDEAEYGLSIPEPEVNKRKTKKKKSEQNENLKKQQQDGIDGACSNAVVEAELDESVKSKEKKKKKNKTTNKKKDATVDQTVEQSDAGLDTNVKDDGGEEDVDETECYAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEREKAANMDEERGEEPEKYAPTGFLRALIIAPTRELALQVTDHLKAVAKHINVRVIPIVGGILAEKQERLLIAKPDIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSINSTEDNSQHKRQTLVFSATVALSSDFRKKLKRGSIQQKQSLTDGLNSIETLSERAGMRPNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISSRDTSKFASLCKSFSNDNFQRFPLENSYVPEVLKRLSLARQIDKITRKESQEKAEKNWFDRNASSVELVTENYDSEEEQVNKHKQMKISSRQLKKLQEELKMLISRPLQSKTFSHRYLVGAGVTPLMQEQLQQLARQKLSDHQGSGLGKKGKLVVIGQDCVDALQALRSAGEEVRMDVKDLAGKQRNMQNLKRKRKEEKKRLRDQRRKQKKKLKYGNE 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00127 786 MobiDBLite consensus disorder prediction 100 121 - -
Gma03g00127 786 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 440 598 IPR001650 -
Gma03g00127 786 Gene3D - 465 627 IPR027417 -
Gma03g00127 786 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 431 IPR014001 -
Gma03g00127 786 Coils Coil 634 674 - -
Gma03g00127 786 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 195 223 IPR014014 GO:0003724
Gma03g00127 786 PANTHER RNA HELICASE 103 706 - -
Gma03g00127 786 MobiDBLite consensus disorder prediction 94 130 - -
Gma03g00127 786 CDD DEADc_DDX24 206 458 - -
Gma03g00127 786 Coils Coil 105 125 - -
Gma03g00127 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 571 IPR027417 -
Gma03g00127 786 Gene3D - 139 429 IPR027417 -
Gma03g00127 786 SMART ultradead3 214 433 IPR014001 -
Gma03g00127 786 Pfam DEAD/DEAH box helicase 219 414 IPR011545 GO:0003676|GO:0005524
Gma03g00127 786 MobiDBLite consensus disorder prediction 746 786 - -
Gma03g00127 786 MobiDBLite consensus disorder prediction 142 187 - -
Gma03g00127 786 Pfam Helicase conserved C-terminal domain 490 557 IPR001650 -
Gma03g00127 786 CDD SF2_C_DEAD 469 567 - -
Gma03g00127 786 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 103 706 - -
Gma03g00127 786 SMART helicmild6 474 558 IPR001650 -
Gma03g00127 786 MobiDBLite consensus disorder prediction 22 70 - -
Gma03g00127 786 Coils Coil 749 780 - -
Gma03g00127 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 414 IPR027417 -
Gma03g00127 786 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 366 374 IPR000629 -
Gma03g00127 786 MobiDBLite consensus disorder prediction 756 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00127 Gma-Chr3 1574731 1582589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00127 171 591 Eukaryotic Initiation Factors Gene Family AT1G72730 27.169 6.69e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00127 K14805 - gmx:100806018 1282.7