Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00121 ATGTCATTCACAGGAACTCTTGATAAATGCACAGCATGTGATAAGACTGTCTATGTGGTTGACTTGTTAACTCTTGAAGGAATTACTTACCATAAAAACTGCTTCAAATGCAGCCACTGCAAGGGATGTCTTACGATGAGCACATACTCCTCAATGGATGGAATTCTTTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAACTTTGGTAAGACGAAGACCATCTTTTGGCCCATCTTTTTAACCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTTGACAAATGCTCAGTTTGCACAAAAACAGTCTATCCTCTGGAAAAGATGACACTTGAAGGGGAATGCTTCCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAACTATGCTGCCCTTGATGGTGTCCTCTACTGTAGGGTCCACTTTGCACAACTTTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAGAAGGACTGTGACTTCGCTGACCGTTTTAACAAAACACACAACTCATTCATTCTTTCACACTAATTCCAACCTTTCTGCTCCAATCTTCGTTTCGTTTTTTTGTTTTGAGGAATTGGTTGTAGAATGTGTTGAAGAGAAATGGTTATGTGAGAGTGTTTGGTTTTGGAAGATAACATATCTTGATATGGATATAGCTTTTCGGTTACCACAGTCAAATGTGGTATTGGATGGTTTGGATTCCTGCATTGTGTTTGGAGGGAGAGGTTTTGGTTGTGCTTTTCTCGGAAACTCGAGGACTATTCCGAAGGCTCGATTTAGTGGGGTGAACAAGATAGGTAGTAGGAGTAGTTCAAGAGTAGAATGCTTAGGAGATTTGAAAGTTTCGATTGGGAACAGGGGTTTGTCTTGGAAGAATAATAGACCTTTTAGGAAGAATAGGGAAATTTGGTCTAAGTGTCAGGGTAATGATTCTTTATCATATGTCAATGGCAATGGACGGAATGTTGGTAGGTTGGATGATGCGGATGAGGACTCCAATTCCAGTGTTGAATTGAGTGAACCTTTGGGAGAAGAAGAAAAAGGGCAAGGAGGGAGGAAAGAAGATGGGGGTGAAGTAGAAATAGAGGTACAAAGTGTGGATGAATTGAAGGAACTGTTGCAAAAGGCCATGAAAGAATTAGAAGCTGCTAGAGTTAACAGCATCGTTTTCGAGGAAAAGGTTAAGAAGATATCGGAGACTGCAATTTTTTTGCAGGATGAAGCTGCAAGTGCTTGGAACAATGTTACTTCTACCCTTGATGTCATCCAAGATATCGTGAGTCAAGAATTTGTTGCCAAAGAAGCTGTTCAGAAAGCAACTATGTCTCTTTCTCTTGCTGAGGCAAGGCTTCAAGTGGCCATGGACTCTTTGGAGGTTACAAAAGAAGTTTATGATACCCCACAAGGTTCTAACAAGAGTAATGGTGACGAAGATATAATTCAAGAGGAGAAAGAACTTTTGCTTGCTCAGGAGGATATCAGGGAATTCCAGACAAATTTAGCAAATTGTGAGAATGAGCTAAGATGCTTGCAATGTAGAAAGGAGGAGTTGCAGAATGAAGTGAACAAATTGCATGAAATTGCAGAACAGGCACAGCTGAAAGCAGCGAAAGCAGAAGAAGATGTTGCAAACATAATGCTTTTAGCAGAGCGAGCTGTTGCCGCTGAACTCGAGGCTACACAACACATGAATGATGCAGAGATTGCATTACAGAAATCAGACAAATCTGCCTCTAGTTTTAATGCTGATACCACAGACACTCTACAAGTACAAGATGTTGTGGCTATTTCTGAGGAGGAAGTGGTTCAAGGTTTATCTGGTGATGATGTTGATAAAAGAGAGCTTGATTACTTAGTCGATGGGGGGGAGCCTTTGCTTGCTATGCAATCACCAGAAAACACCAGCCAAAGTTTGGAAGACACGGTACAGTCTGATTATCTGAGTGATCATGAGAATGGCCAGTTAAGCTTAGACTCTCCTAAAGAAGCTGAAGTTGAAATAGGAAAGTCAAAGAATGTAGTTCAAACAAAAAAGCAGGAAACACAGAAAGATTCGATGAGAGATAATTCACTGTTGGCTCCCAAGACATCATTGAAGAAGTCTTCCCGATTTTTTCCAGCATCATTCTTCTCTTTTACTGCAGAAGAGACTGATTACACACCAGCATCAGTTTTCCATGGTCTTGTAGAGTCTGCACAGAAGCAACTACCCAAGCTGGTTGTTGGGTTATTGTTAATTGGAGCAGGGCTTGTGCTCTACACAAATAGAACAGAGAGGAGTGCCCAGCTGCTTCAGCAGCCAGAAGTCATTGCAACCACTGTTGAAGAAGTTTCTTCAACTGCAAAGCCATTGGTTAGAGAGCTTCAGGAGCTTCCCAGGAGAATTAAGAATATTATTGCATCATTACCTGATCAAGAGGTGAATGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTACTACTTGCAAGTGTTGTATTTGTGCCAATATTTCAAAAGATTCCTGGAGGAAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCTATCATTCGTCATGTTCATGGGACAAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTGGAGCTCTCGGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCCCAGGTTTTGGTGACTGCTGTAGTTGTCGGCTTGGTGGCTCATTATATTTGTGGTCAAGCTGGTCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCATCAACTGCTGTTGTTCTGCAGGTTTTACAGGAGAGAGGTGAGAGCACATCACGGCATGGAAGGGCTACATTTTCTGTTCTGCTTTTTCAGGATTTGGCTGTTGTTGTCTTGCTAATACTCATACCTCTTATTTCACCTAATTCTTCCAAAGGAGGGGTTGGTTTCCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTCAAGGCAGTGGTTGCTATTTCAGCCATAATTGCAGGTGGACGATTGCTCCTTCGACCTATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACCAGCCTTCTCACAGCCAGGGCTGGACTTTCCATGGCATTGGGGGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTCCAGTCATTACAGGGGCCCTGGGACTCTTGATATTTGGCAAAACTTTGTTGGTTTCTTTAATCGGAAGAGCTTTTGGTATTTCTCTCATTTCTGCTATCAGAGTGGGTCTTCTTCTTGCTCCGGGAGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGTTGTCCTCTTTACTGTTTCTTGTTGTGGGAATTTCAATGGCTCTCACTCCATGGCTAGCTGAAGGAGGTCAGCTCCTTGCTTCCCGTTTTGAGTTACACGATGTTCGAAGTTTATTACCTGTGGAAAGTGAGACAGATGATCTGCAAAATCATATCATTATTTGTGGATTTGGGCGAGTTGGGCAGATCATTGCACAACTTCTTTCTGAGCAACTTATTCCTTTTGTTGCACTAGATGTGAGAAGTGATAGAGTGACAATTGGACGTTCCCTGGATCTCCCTGTGTACTTTGGAGATGCTGGTAGTCGAGAGGTCCTACACAAGGTTGGGGCTGAAAGGGCAAGTGCTGCTGCGGTAACTCTAGATTCCCCTGGAGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGCACTTCCCAAACGTGAAGACTTTTGTTCGTGCTCATGATGTTGATCATGGATTAAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCCGTGCTTGCTCAGGCTAAACTTCCTACATCAGAGATTGCAGCGACTATAAATGAATTCAGATCCCGCCATCTTTCTGAGCTCACTGAACTATCCGAAACAAATGGAACTTCTTTTGGATATGGATATAATAGAACTACGAGCAAAGCCAAATCTCATTCCCCAGATTCATCAGATGATACTCAAGTCTCTGAAGGTAAACTGGCGACATGA 4323 0.4266 MSFTGTLDKCTACDKTVYVVDLLTLEGITYHKNCFKCSHCKGCLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFGKTKTIFWPIFLTPSKLSSMFSGTLDKCSVCTKTVYPLEKMTLEGECFHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHRRTVTSLTVLTKHTTHSFFHTNSNLSAPIFVSFFCFEELVVECVEEKWLCESVWFWKITYLDMDIAFRLPQSNVVLDGLDSCIVFGGRGFGCAFLGNSRTIPKARFSGVNKIGSRSSSRVECLGDLKVSIGNRGLSWKNNRPFRKNREIWSKCQGNDSLSYVNGNGRNVGRLDDADEDSNSSVELSEPLGEEEKGQGGRKEDGGEVEIEVQSVDELKELLQKAMKELEAARVNSIVFEEKVKKISETAIFLQDEAASAWNNVTSTLDVIQDIVSQEFVAKEAVQKATMSLSLAEARLQVAMDSLEVTKEVYDTPQGSNKSNGDEDIIQEEKELLLAQEDIREFQTNLANCENELRCLQCRKEELQNEVNKLHEIAEQAQLKAAKAEEDVANIMLLAERAVAAELEATQHMNDAEIALQKSDKSASSFNADTTDTLQVQDVVAISEEEVVQGLSGDDVDKRELDYLVDGGEPLLAMQSPENTSQSLEDTVQSDYLSDHENGQLSLDSPKEAEVEIGKSKNVVQTKKQETQKDSMRDNSLLAPKTSLKKSSRFFPASFFSFTAEETDYTPASVFHGLVESAQKQLPKLVVGLLLIGAGLVLYTNRTERSAQLLQQPEVIATTVEEVSSTAKPLVRELQELPRRIKNIIASLPDQEVNEEEASLFDMLWLLLASVVFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAVVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVITGALGLLIFGKTLLVSLIGRAFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAEGGQLLASRFELHDVRSLLPVESETDDLQNHIIICGFGRVGQIIAQLLSEQLIPFVALDVRSDRVTIGRSLDLPVYFGDAGSREVLHKVGAERASAAAVTLDSPGANYRTVWALSKHFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTELSETNGTSFGYGYNRTTSKAKSHSPDSSDDTQVSEGKLAT 1440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00121 1440 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gma03g00121 1440 Gene3D Cysteine Rich Protein 100 168 - -
Gma03g00121 1440 Pfam LIM domain 10 65 IPR001781 -
Gma03g00121 1440 Pfam LIM domain 104 159 IPR001781 -
Gma03g00121 1440 SMART lim_4 103 155 IPR001781 -
Gma03g00121 1440 SMART lim_4 9 61 IPR001781 -
Gma03g00121 1440 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 238 1439 - -
Gma03g00121 1440 Coils Coil 501 570 - -
Gma03g00121 1440 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Gma03g00121 1440 ProSiteProfiles RCK N-terminal domain profile. 1244 1366 IPR003148 GO:0006813
Gma03g00121 1440 CDD LIM1_SF3 6 68 - -
Gma03g00121 1440 Gene3D Cysteine Rich Protein 5 72 - -
Gma03g00121 1440 MobiDBLite consensus disorder prediction 689 707 - -
Gma03g00121 1440 MobiDBLite consensus disorder prediction 689 711 - -
Gma03g00121 1440 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 238 1439 - -
Gma03g00121 1440 CDD LIM2_SF3 104 164 - -
Gma03g00121 1440 MobiDBLite consensus disorder prediction 1406 1421 - -
Gma03g00121 1440 Pfam TrkA-N domain 1245 1358 IPR003148 GO:0006813
Gma03g00121 1440 Coils Coil 381 408 - -
Gma03g00121 1440 Gene3D - 1240 1404 - -
Gma03g00121 1440 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Gma03g00121 1440 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Gma03g00121 1440 MobiDBLite consensus disorder prediction 1406 1440 - -
Gma03g00121 1440 MobiDBLite consensus disorder prediction 362 379 - -
Gma03g00121 1440 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gma03g00121 1440 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gma03g00121 1440 Pfam Sodium/hydrogen exchanger family 841 1212 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Gma03g00121 1440 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Gma03g00121 1440 Gene3D - 832 1219 IPR038770 -
Gma03g00121 1440 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 843 1123 IPR004771 GO:0006812|GO:0008324|GO:0016021
Gma03g00121 1440 MobiDBLite consensus disorder prediction 345 379 - -
Gma03g00121 1440 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1241 1382 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00121 Gma-Chr3 1499456 1514547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00121 328 1439 Inorganic Solute Cotransporters AT4G00630 70.239 0.0 1408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma03g00121 Na_H_Exchanger 1.4e-58 CL0064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00121 - - gmx:100800772 2175.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00121 03 1499456 1514547 Gma03g00121 03 1499456 1514547 ECH