Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00117 ATGGGAAGGAAACCATGTTGTGACAAGATGGGGTTGAAGAAAGGTCCTTGGACTGCTGAAGAGGATGAGATTCTTGTAAATTATATCAACAAGAATGGTGGTCATGGAAGTTGGCGTTCTCTCCCCAATTTAGCAGGTCTTCTTCGTTGTGGTAAGAGTTGCCGGTTAAGATGGACAAACTACCTCAGACCAGATATTAAACGTGGTTCCTTTACACTTGAGGATGAAAAACTAATCATACAGCTTCATGGTATCCTTGGAAATAGGTGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATAAAAAACTTATGGAACACCCACTTGAAGAAACGTCTCATTTGCATGGGCCTTGACCCACAAACCCACCAACCACTAGCCTCTCCACATAACCCTAATGACAAGGCTCATGCATCATCATCCACTTCAACCCGCCACATGGCCCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCAAGGCTCTCAAGGGAACCACACTTATACAACAACAACAACAAAACTGACTCTGACTACTTCCTACGAATTTGGAACTCTGATCTTGGAGAATCTTTTCGTGATGTCCACAAATTAGAATCTTCAATCAAATGTGAGTCACAGTCTGCCACAACGGATTTGGCTTCCTTAACCCCAGCAAGCATTGTGAAAGAGGAGTTTCTGTGGGGTGTTAAGAAAATTGTCTCGGATTCATCATCAAGCTCTAGTGAACTACACCATGACTCTTGTGACACTTCTTTGCAGCTCTTGTTAGACTTTCCTATGAACAATGACATGAGCTTCTTAGAATTATGA 822 0.4355 MGRKPCCDKMGLKKGPWTAEEDEILVNYINKNGGHGSWRSLPNLAGLLRCGKSCRLRWTNYLRPDIKRGSFTLEDEKLIIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLASPHNPNDKAHASSSTSTRHMAQWESARLEAEARLSREPHLYNNNNKTDSDYFLRIWNSDLGESFRDVHKLESSIKCESQSATTDLASLTPASIVKEEFLWGVKKIVSDSSSSSSELHHDSCDTSLQLLLDFPMNNDMSFLEL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00117 273 PANTHER BNACNNG13680D PROTEIN 1 272 - -
Gma03g00117 273 Gene3D - 11 68 - -
Gma03g00117 273 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Gma03g00117 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gma03g00117 273 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gma03g00117 273 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma03g00117 273 CDD SANT 16 62 IPR001005 -
Gma03g00117 273 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma03g00117 273 MobiDBLite consensus disorder prediction 124 153 - -
Gma03g00117 273 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 272 - -
Gma03g00117 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma03g00117 273 SMART sant 67 115 IPR001005 -
Gma03g00117 273 SMART sant 13 64 IPR001005 -
Gma03g00117 273 CDD SANT 70 113 IPR001005 -
Gma03g00117 273 MobiDBLite consensus disorder prediction 128 153 - -
Gma03g00117 273 Gene3D - 70 117 - -
Gma03g00117 273 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00117 Gma-Chr3 1449851 1452477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00117 1 272 MYB Transcription Factor Family AT3G61250 63.958 8.00e-123 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma03g00117 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00117 K09422 - gmx:100798658 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00117 03 1449851 1452477 Gma03g00117 03 1449851 1452477 ECH