Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00109 ATGGATCGAGGGGACCAAATGACATTACCTGGCTCTGCATCTTACTATATGCAGAGAGGAATACCTGGTGCTGGAAACCAACCTGTACTGCACAATTCACCTAATATTGGACCATTGTCTAACCCTAATCTACCATGTCAATCAAGCATTGGGGGTGGTGGTACCATTGGATCCACATTACCCTTAGAGTCTTCGGGAATTTCAGCTCCATGTGTCAATGTGAGTGCTCCTTCTGGGACTCTGCCTGGGGAAACTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATACGGCTCCGACGGAGCTGTGTCGTTGGCGTTGACTCCGACACCGGCTAGTCATCCTGGAGCCTTGGCACAAGGCCAGAAACGGGGCAGAGGCCGCCCACCTGGGTCTGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCGGCTGGAATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGACATTGCAACAAAGATCATGTCATTTTCTCAGCAGGGGCCTAGAGCTATATGTATTTTGTCAGCTAATGGTGCTGTCTCTACTGTGACACTTCGTCAGCCTTCAACATCAGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATAGTGTGCCTATCAGGCTCTTACTTGGTTGCTGATAGTGGTGGCTCCCGCAATCGGACTGGTGGATTAAGCGTTTCACTTGCAAGTCCTGATGGTCGTGTCGTCGGTGGAGGAGTTGGTGGAGTTCTTATTGCTGCAAGTCCAGTTCAGGTGATACTAGGGAGCTTTTCATGGGGCGCATCAAAGACGAAGATCAAGAAAAAAGAAGGTTCAGAAGGTGCAGAAGTTGCTTTAGAGACTGATCATCAGACAGTTCATAATCCAGTCGCAGTGAATAGCATTTCTCCGAATCAAAATCTTACTCCAACCTCATCTCTAAGTCCTTGGCCTGCATCGCGATCGTTGGATATGCGCAATTCGCATATTGACATTGATTTAATGCGCGGTAACTACAGCATGGGAAGTACCAACAGCAGAGTAGAAGCTAGCTGA 1065 0.4836 MDRGDQMTLPGSASYYMQRGIPGAGNQPVLHNSPNIGPLSNPNLPCQSSIGGGGTIGSTLPLESSGISAPCVNVSAPSGTLPGETVKRKRGRPRKYGSDGAVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVADSGGSRNRTGGLSVSLASPDGRVVGGGVGGVLIAASPVQVILGSFSWGASKTKIKKKEGSEGAEVALETDHQTVHNPVAVNSISPNQNLTPTSSLSPWPASRSLDMRNSHIDIDLMRGNYSMGSTNSRVEAS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00109 354 CDD DUF296 153 267 IPR005175 -
Gma03g00109 354 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Gma03g00109 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Gma03g00109 354 MobiDBLite consensus disorder prediction 76 137 - -
Gma03g00109 354 MobiDBLite consensus disorder prediction 303 323 - -
Gma03g00109 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 275 - -
Gma03g00109 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 316 IPR039605 GO:0003680
Gma03g00109 354 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Gma03g00109 354 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Gma03g00109 354 Gene3D - 154 293 - -
Gma03g00109 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00109 Gma-Chr3 1191514 1197943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00109 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.556 5.44e-90 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00109 - - gmx:100783475 649.047