Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00071 ATGAGTTCTTCACAGCACTTGAACAATGTTGGTGAAGATAGCAGCAGTAGAGACATGAGTTTCTTCCCTCCTTCTTCTCGTTATGTGGGTTCCTCACAAACACAGACTCCTCCTTTGTCTCTGAGTCATGGAAATGGGGTAGAGGGTTCAAATTCAAACCCTGAGATGGGTCTTCTGATTTTTGCGTCCACAGTGTTTCAGCAGCCCCAGGAGTGCAGGGGAACAAAGAGAGCCATTGATgaagaagaagaagaagaagaagaagacgaggaagaagaagaagGGGTTGATGAGATAGAGAACAACAAGAACTTGTGTTTGAAACTTGGTGGTGATGAAGCACAAGCTGCTAAGAGCTCTGCTTCAGGGAAAACCAAGCTTTGTGCAAGAGGTCACTGGAGGCCAGCTGAAGATGAAAAACTCAAGGAGCTTGTTGCTCAATATGGTCCTCAAAATTGGAACTTGATTGCTGAGAATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTTAACCAGCTAGATCCCAGGATAAACAGAAGGTCCTTTTCTGAGGAGGAAGAGGAGAGGCTTTTGACTGCACACAGAATGTATGGTAACAAATGGGCCATGATTGCTAGGCTCTTCCCTGGAAGGACTGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAGAGGGAGCACTCTAGTCGTGTGTACAGAAGGAGGAAACTGGTTGTTAATGAAACCGTTCTTCCAAAGGGTTTGAATCTGACTCTGTCTAATAACAATGCAGGGAGTGAGTCAACCATCTCAAGCACCATTGACGAATCTGCCTCAACTTGTACTAACCTCTCCCTCACACCACCCTCTTCAGCCAAAGTAACTCCTCCTTTTGGAAGACTCTTTGACCATCATGGACAAGCTATAGGGGATGTGAGTTTTAACAAGAAGTTTTGTGGTGCTTCTTGGAACGGGGTAGCATATAAAAAGGCTGAACAAGTGGGAAAGCTTAAGGGTGTGGACCAGTCTAATTTTTCAGATGCAAATTCAGAAGTATCAGTATCTGAGTCAGTTGCCACCAATAGGTCCAATGTCTCAATTTCTGAAGAGAGTGAAACTGTGGGTGATAAGATTAACATGCCATTCATTGATTTTCTTGGAGTAGGAGCTACCTAG 1176 0.4277 MSSSQHLNNVGEDSSSRDMSFFPPSSRYVGSSQTQTPPLSLSHGNGVEGSNSNPEMGLLIFASTVFQQPQECRGTKRAIDEEEEEEEEDEEEEEGVDEIENNKNLCLKLGGDEAQAAKSSASGKTKLCARGHWRPAEDEKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRSFSEEEEERLLTAHRMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRQREHSSRVYRRRKLVVNETVLPKGLNLTLSNNNAGSESTISSTIDESASTCTNLSLTPPSSAKVTPPFGRLFDHHGQAIGDVSFNKKFCGASWNGVAYKKAEQVGKLKGVDQSNFSDANSEVSVSESVATNRSNVSISEESETVGDKINMPFIDFLGVGAT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00071 391 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
Gma03g00071 391 Coils Coil 72 102 - -
Gma03g00071 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 176 IPR017930 -
Gma03g00071 391 MobiDBLite consensus disorder prediction 81 98 - -
Gma03g00071 391 MobiDBLite consensus disorder prediction 1 55 - -
Gma03g00071 391 SUPERFAMILY Homeodomain-like 130 223 IPR009057 -
Gma03g00071 391 MobiDBLite consensus disorder prediction 71 100 - -
Gma03g00071 391 Gene3D - 184 243 - -
Gma03g00071 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 231 IPR017930 -
Gma03g00071 391 Pfam Myb-like DNA-binding domain 133 193 - -
Gma03g00071 391 PANTHER MYB PROTEIN-RELATED 78 391 - -
Gma03g00071 391 Gene3D - 130 181 - -
Gma03g00071 391 ProSiteProfiles Myb-like domain profile. 130 176 IPR001005 -
Gma03g00071 391 CDD SANT 193 224 IPR001005 -
Gma03g00071 391 CDD SANT 133 174 IPR001005 -
Gma03g00071 391 SMART sant 181 229 IPR001005 -
Gma03g00071 391 SMART sant 129 178 IPR001005 -
Gma03g00071 391 PANTHER OS08G0435700 PROTEIN 78 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00071 Gma-Chr3 807097 809042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00071 89 391 MYB Transcription Factor Family AT5G17800 44.013 3.78e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma03g00071 Myb_DNA-bind_6 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00071 K09422 - gmx:100776882 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00071 03 807097 809042 Gma03g00071 03 807097 809042 ECH