Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00062 atGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAGGAGGATATTATCCTTGTCTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTATCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTAAGGCCAGGAATCAAGAGAGGGAACTTCACCCCCCATGAGGAAGGGATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTATCTTCCACAAAGAACAGACAATGACATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTGAAGAAATTTCAAGCAGCTTTGGATCCTCACTCAGCATCAGACTCAACAGCCAGTGGTCAATTTCTACCAAAGAGCTTTAGTGACAGAAGAAGTACTTTAGACATCAGCAGCAACAACAACAATAATCATGGCTCGTCCATTAGGCTTAGTCATCATCAATCTCAGTCCTCTTCCACAACAACATATGCCTCAAGCACTGAGAATATCTCAAGACTCTTGGAAGGTTGGATGAGATCTTCCCCAAAGCAACTCAACAAGGGATCAATAATATCCCAATATGATGAAGATCATCAGCTCCAAGGCATCAATGATGATGATGATAATAACAACAACAACTTTGTAAGCACTACTAAGCTAGTGAACCTTCATCATCTTCATCAGCACAAAATTAGAAACAAAGATCATGAGCAAGAGGGTGGTGGAGTAGATAATAACATGGTTTCTCATCATGAAGAGTTCGATTCTATTTTGTCCTTTGAGAACCAAAACAATGCTGCTTGGGACAAGTCCACTTGTGATTCCATGCCAGAAAAGAGTTCTGAAGCTTCTGCTGCTGCTGATCATCATCATCATCATCATCATGATATAGCTGCTGCTCATGAGAGGAACAATGTCAGGCAAAAATCTGAGAATAGTAGTGGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTCTTGGATGAAAACGTTGGTCATCAAGTGGAGGAGATGATGGAGTTGTCTCCGATGTTCTAA 1083 0.4192 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALDPHSASDSTASGQFLPKSFSDRRSTLDISSNNNNNHGSSIRLSHHQSQSSSTTTYASSTENISRLLEGWMRSSPKQLNKGSIISQYDEDHQLQGINDDDDNNNNNFVSTTKLVNLHHLHQHKIRNKDHEQEGGGVDNNMVSHHEEFDSILSFENQNNAAWDKSTCDSMPEKSSEASAAADHHHHHHHDIAAAHERNNVRQKSENSSGAPPLSFLEKWLLDENVGHQVEEMMELSPMF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00062 360 CDD SANT 69 112 IPR001005 -
Gma03g00062 360 Gene3D - 13 66 - -
Gma03g00062 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gma03g00062 360 CDD SANT 16 61 IPR001005 -
Gma03g00062 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gma03g00062 360 PANTHER TRANSCRIPTION FACTOR MYB60 1 351 - -
Gma03g00062 360 SMART sant 66 114 IPR001005 -
Gma03g00062 360 SMART sant 13 63 IPR001005 -
Gma03g00062 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma03g00062 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma03g00062 360 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma03g00062 360 MobiDBLite consensus disorder prediction 284 313 - -
Gma03g00062 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 351 - -
Gma03g00062 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma03g00062 360 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma03g00062 360 MobiDBLite consensus disorder prediction 298 313 - -
Gma03g00062 360 Gene3D - 68 134 - -
Gma03g00062 360 MobiDBLite consensus disorder prediction 146 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00062 Gma-Chr3 707870 709833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00062 1 125 MYB Transcription Factor Family AT3G01140 70.400 5.80e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma03g00062 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00062 K09422 - gmx:100802204 669.848