Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00024 ATGGCTTCTCTGCTCCTCCCTCCAACTGCTACTTCTTCCACACTTAAACACAACAACCAAATCCTGAAACTGAAACCAAACAATAATGCTCATGCTACATGTAACGTCTTCTTATCAAACTCAAACCACTACCGTTTCAACTCTGCAAAGTGCCATGCATTGTTCGATGACGTGGCCAAAGGGTTGTTGGAGAGCAGCAGTGTCGGGGTGGACCAGTTCCAGAGAGTGACAGAAGGCTTATCCGACATGCAGAGGTGGGTGTTCCTTGTCTTTGGTGGGTTGACGTGGATTTACCTGACTGCAAGACCAGGTGTTCTTGTCGGTGCCATTGATGCGTACCTTTTGGCACCTCTTCAACTGGGTTTGGACAACTTGTCTGGAAGGAGGAACTTGAAGAGGAGTGACTTTGTGGTTGGAGACAAGCTCGGTGAAGGGTCCTTTGGTGTTGTCTATTCGGGTGTTTTGCTTCCAAAGAATGTGGATGTGGATGTGCTGCAGAAGAGGGGGAGAGCCAAGACAACTCAGCTTGATGCCAAGTCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATCCAAGGGGCTGAGGAGTTTGGTGATTATGAGGAGTGGTTCAATTACAGGCTATCTAGGGCAGCACCCGAAACATGTGCTGACTTCCTTGGAACTTTTGTAGCTGATCAAACTAATTCACAGTTTACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTGGAATCAGTGATGTTTGGACGTGTCTTGCAAGGTGTGGACTCTTCGAAACGAAATGCATTGATCATCAAACAAATAATGCGCCAGATCATTACGTCTCTTAGGAAAATTCACGATACAGGCATTGTTCACAGGGATGTAAAGCCAGCCAACTTAGTGGTTACTAAACGAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGAGGATTGGAAAGAATTATGTTCCAAATCGTACCCTTTTGGATCCTGACTACTGTCCCCCAGAATTATATGTACTTCCAGAAGAAACACCAAGTCCACCACCAGAACCAATTGCTGCTTTCCTTTCACCAGTTCTGTGGCAGTTAAACAGCCCTGATTTGTTTGATATGTATTCAGCTGGGATTGTACTACTGCAAATGGCAATACCAAGCTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAACTTGGAACTAAAAACATGTGGATATGATATGAAAAAATGGAGGGACTACACTCGCCTCCGGCCTGACTTGCAAATTCTAGATAGTGAATCCAGTAGAGGCTGCAGTCCTTTCAAAATTAAACTTGAACAGAAAGTGAGCTGCTTCGCAATGAGGAGCACATTTGAATTCAAAGGCACACCATAA 1428 0.4419 MASLLLPPTATSSTLKHNNQILKLKPNNNAHATCNVFLSNSNHYRFNSAKCHALFDDVAKGLLESSSVGVDQFQRVTEGLSDMQRWVFLVFGGLTWIYLTARPGVLVGAIDAYLLAPLQLGLDNLSGRRNLKRSDFVVGDKLGEGSFGVVYSGVLLPKNVDVDVLQKRGRAKTTQLDAKSKDKVILKKVKVGIQGAEEFGDYEEWFNYRLSRAAPETCADFLGTFVADQTNSQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIITSLRKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRTLLDPDYCPPELYVLPEETPSPPPEPIAAFLSPVLWQLNSPDLFDMYSAGIVLLQMAIPSLRSPAALKNFNLELKTCGYDMKKWRDYTRLRPDLQILDSESSRGCSPFKIKLEQKVSCFAMRSTFEFKGTP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00024 475 Gene3D Transferase(Phosphotransferase) domain 1 276 458 - -
Gma03g00024 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Gma03g00024 475 Pfam Protein kinase domain 285 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g00024 475 SUPERFAMILY Protein kinase-like (PK-like) 132 405 IPR011009 -
Gma03g00024 475 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 448 IPR044803 GO:0004674|GO:0009579
Gma03g00024 475 Gene3D Phosphorylase Kinase; domain 1 124 245 - -
Gma03g00024 475 SMART serkin_6 136 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g00024 475 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 448 - -
Gma03g00024 475 ProSiteProfiles Protein kinase domain profile. 136 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00024 Gma-Chr3 305717 308730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00024 136 334 MAP Kinase Kinase Kinase AT3G13530 25.248 1.05e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Gma03g00024 Pkinase 3.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00024 - - gmx:100786843 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00024 03 305717 308730 Gma18g01996 18 53255739 53259211 PCT