Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00014 ATGGGACGCGAAGCGACGAAGAAGAAGAAGATGAATAAGAATGCAAAATCTGGGGGTTTTGAATCACTTGGTCTGAATCCCAATGTGTTCAAAGGAATCAAGCGCAAAGGGTACAAAGTGCCCACTCCGATTCAGCGGAAGACCATGCCCCTCATCCTTTCTGGCTCCGACGTCGTTGCCATGGCTCGCACTGGCTCTGGCAAAACGGCGGCGTTTCTTGTCCCCATGCTTCACCGCCTCAACCAGCATATCCCTCAGTCTGGTGTCAGAGCCCTCATTCTATCCCCTACCAGGGAcTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTGTTAGTTGGTGGAGATAGTATGGAGATTCAGTTTGAGGAATTAGCTCAGAGTCCTGACATCATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCATTGCGCAGCGTCGAGTATGTTGTTTTCGACGAGGCTGATTGTTTATTTGGCATGGGTTTCGCCGAGCAGTTGCATCAGATTCTTGCTCAGCTCGGGGAGAACCGTCAGACCTTGCTTTTCAGTGCCACACTGCCCAGTGCCCTTGCTGAATTTGCCAAGGCTGGTTTGAGAGACCCTCAGCTTGTCCGCCTTGACTTAGAAACTAGAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAGGAGAAGTACTCCGCCTTGCTCTATTTGGTTCGGGAGCACATTGGTTCTGATCAGCAGACATTGATTTTTGTGTCCACCAAGCATCATGTGGAGTTTCTCAATGTTTTGTTTCGCGAAGAGGGTATTGAGCCATCTGTGTGTTATGGCGACATGGACCAAGATGCTCGCAAAATCCATGTATCGAGGTTTAGGGCTAGAAAGACAATGTTGTTGATTGTGACAGATGTTGCGGCCCGGGGCATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCCCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGGACTGCATATTCTTTTGTGACTCCTGAGGATATGGCTTACCTTTTGGATCTTCATTTGTTTCTTTCGAAACCAATCAAACCTGCTCCCACCGAAGAAGAGTTCTTGCAGGATATGGATGGAGTAATGTCTAGATGTGAACAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATCGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCTGCGGAACTGGAATTATTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCCGCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCTCATGAAGGGCTGCATCCAATGTTCATGAATGTGTTGGAAACAGGGGAGTTAACGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACTATTTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCTGGCCAATGGGTCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCGTGAACAGCAGCAGTCTAAGAGTAATAAGGAAAAGGAGGAAATTCAATCAGAAATCAGTCCTTCCATGGAGAAAGGAAGAAAAGCAGCACGTGGTTCTAAGAGGAAGCCCCAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTACAGTAAAAGCTAATGAAGACTTTGCTTCTAATAGATTGGAAGCAGCTGTCCTTGATCTAGTGGCAGATGATGGTACTGGCATTAAGAAACAAAGATCTATGTATCACTGGGATAAGAGGGGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCAAACAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACATGGTAGGATATCACTTAAAGGGACAAATAATGATGGTGATTCTCAGGAATCAACAAGTTTGGCAGGATCTTACCAAAGAGGTCGTAGGAATTTTAAAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAGATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGACAAAAGCCAACAGGGTTTCTTATATAAAGAGCAAGTCGACAAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAAAAGAAAAGGCAAATAG 2337 0.4399 MGREATKKKKMNKNAKSGGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMLHRLNQHIPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMEIQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETRISPDLKLAFFTLRQEEKYSALLYLVREHIGSDQQTLIFVSTKHHVEFLNVLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEEFLQDMDGVMSRCEQAMANRETIYGRFPQKVIDLVSDRVREIIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPHEGLHPMFMNVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWVDVMKRKRAIHENIINLVREQQQSKSNKEKEEIQSEISPSMEKGRKAARGSKRKPQSFKDEDHYISSIPKNQHMEAGLTVKANEDFASNRLEAAVLDLVADDGTGIKKQRSMYHWDKRGKKYIKLNNGDRVAANGKIKTESGAKTKANKTGIYKKWKERSHGRISLKGTNNDGDSQESTSLAGSYQRGRRNFKGSKKQHSMPNAHVRSEIKDMDQIRKERQTKANRVSYIKSKSTKGKKFGKNGKKRKGK 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00014 778 MobiDBLite consensus disorder prediction 694 714 - -
Gma03g00014 778 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 775 - -
Gma03g00014 778 Pfam DBP10CT (NUC160) domain 625 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Gma03g00014 778 CDD DEADc_DDX54 18 223 - -
Gma03g00014 778 MobiDBLite consensus disorder prediction 547 591 - -
Gma03g00014 778 MobiDBLite consensus disorder prediction 551 574 - -
Gma03g00014 778 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Gma03g00014 778 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Gma03g00014 778 SMART helicmild6 275 356 IPR001650 -
Gma03g00014 778 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Gma03g00014 778 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 5 775 - -
Gma03g00014 778 CDD SF2_C_DEAD 241 365 - -
Gma03g00014 778 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Gma03g00014 778 SMART DBP10CT_2 625 687 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Gma03g00014 778 MobiDBLite consensus disorder prediction 684 778 - -
Gma03g00014 778 Gene3D - 2 225 IPR027417 -
Gma03g00014 778 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Gma03g00014 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Gma03g00014 778 MobiDBLite consensus disorder prediction 730 754 - -
Gma03g00014 778 SMART ultradead3 37 244 IPR014001 -
Gma03g00014 778 MobiDBLite consensus disorder prediction 760 778 - -
Gma03g00014 778 Gene3D - 237 467 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00014 Gma-Chr3 237435 242607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00014 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.202 2.39e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00014 K14808 - gmx:100806274 1471.06