LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g00006	ATGTTGCACTTGGAGTTGAAGTATGATATATTAGTAAGAAATTCAAAGGAGGAGATTGAAGAGCGTATACAAATTAAAGCCCTCGTCGCTTCACAGCGGCGAGCAGTCTTAAACTGCTTATCCCGGAAAATCACGACGACAACACAACACCCAACTGGCAGCAATGGTGCTGATGACAGCTTCATAAGTATAATGGGCTTGGTCACTGTTACATGGACAAATTATCTAAAAAAGCGTATTCCACTAAGAATAAGGTTTCTTCATACCTTGAAAGGTAATCAAATAGGCCAAATTTTAATGTCTCCACCTCTTGCATCTCTGGACCTTCCTGACATCTGGAGTCCTATTTCTTCATGTCGGAGTATTCCAGCAATACATAAAAGCTTTAATGAGCAGACTACTGTAGTGCTTGATGGAAAGTTGATATCCATGGAAATCAGATCAAAAATAGCTGCTAAGGTAAGACAAATGAAGAAAGGCCTAGGAAAAGTTCCTGGATTAGCTGTAATCTTAGTGGGCCAAAGAAGGGATTCTCAAACTTACGTTCGCAACAAGATAATGGCCTGTGAAGAAGTTGGAATCAAGTCTTTGGTGACTGAATTACCCACTGATTGTGCAGTAACAGATGTTCAAAATGCCATCATGAGATTTAACAAAGATCCATCCATTCATGGTATTCTTGTGCAACTTCCTCTACCGCAACATCTAGATGAGGAAAAAGTTTTGGATGCTGTATGTCTAGAAAAAGATGTGGATGGTTTCCATCCCCTTAATATGGGGAATCTTGCCATAAGAGGAAGGGAGCCACTGTTTACTCCTTGTACTCCAAAGGGCTGTATTGAGTTATTGATCAGATCAGGAGTCGAGATTATGGGAAAAAAAGCCGTAGTGATTGGAACAAGTAATATTGTGGGTTTGCCAGCATCCTTGTTATTGCAGAGACACCATGCAACAGTCACTGTCATACATGCCTTCACACAAAACCCTGAACAGATCACCTCAGAAGCTGATATTGTAGTTTCAGCTGCTGGAGTGCCTAATTTGGTCCGTGGGAACTGGATAAAACCTGGTGCAGCTGTGATCGATGTTGGTACAACTCCGGTTGAGGATCCTGGCTGCGAGGATGGTTATCGCCTCGCAGGTGACGTATGCTATGAAGAGGCCGTAAAAGTGGCATCCATTATTACTCCTGTGCCTGGCGGGGTTGGGCCTATGACCGTTGCTATGCTACTATGTAATACATTAGATTCTGCAAAGCGCATGCTCAATTTTAGTTGA	1278	0.4241	MLHLELKYDILVRNSKEEIEERIQIKALVASQRRAVLNCLSRKITTTTQHPTGSNGADDSFISIMGLVTVTWTNYLKKRIPLRIRFLHTLKGNQIGQILMSPPLASLDLPDIWSPISSCRSIPAIHKSFNEQTTVVLDGKLISMEIRSKIAAKVRQMKKGLGKVPGLAVILVGQRRDSQTYVRNKIMACEEVGIKSLVTELPTDCAVTDVQNAIMRFNKDPSIHGILVQLPLPQHLDEEKVLDAVCLEKDVDGFHPLNMGNLAIRGREPLFTPCTPKGCIELLIRSGVEIMGKKAVVIGTSNIVGLPASLLLQRHHATVTVIHAFTQNPEQITSEADIVVSAAGVPNLVRGNWIKPGAAVIDVGTTPVEDPGCEDGYRLAGDVCYEEAVKVASIITPVPGGVGPMTVAMLLCNTLDSAKRMLNFS	425

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma03g00006	425	Gene3D	-	137	398	-	-
	Gma03g00006	425	CDD	NAD_bind_m-THF_DH_Cyclohyd	248	419	IPR020631	GO:0004488
	Gma03g00006	425	ProSitePatterns	Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2.	399	407	IPR020867	GO:0003824
	Gma03g00006	425	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	165	187	IPR000672	GO:0004488
	Gma03g00006	425	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	337	366	IPR000672	GO:0004488
	Gma03g00006	425	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	378	394	IPR000672	GO:0004488
	Gma03g00006	425	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	241	262	IPR000672	GO:0004488
	Gma03g00006	425	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	288	308	IPR000672	GO:0004488
	Gma03g00006	425	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	206	233	IPR000672	GO:0004488
	Gma03g00006	425	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	395	413	IPR000672	GO:0004488
	Gma03g00006	425	Pfam	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	137	252	IPR020630	GO:0004488
	Gma03g00006	425	Gene3D	Leucine Dehydrogenase, chain A, domain 1	139	416	-	-
	Gma03g00006	425	PANTHER	BIFUNCTIONAL PROTEIN FOLD 1, MITOCHONDRIAL	112	424	-	-
	Gma03g00006	425	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	254	419	IPR036291	-
	Gma03g00006	425	Hamap	Bifunctional protein FolD [folD].	134	422	IPR000672	GO:0004488
	Gma03g00006	425	SUPERFAMILY	Aminoacid dehydrogenase-like, N-terminal domain	134	253	IPR046346	-
	Gma03g00006	425	PANTHER	C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED	112	424	-	-
	Gma03g00006	425	Pfam	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	255	420	IPR020631	GO:0004488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g00006	Gma-Chr3	158174	164584	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g00006	-		-	gmx:100791604	720.309

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma03g00006	03	158174	164584	Gma03g00006	03	158174	164584	ECH
	Gma09g02435	09	49672802	49682124	Gma03g00006	03	158174	164584	PCT