Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00003 ATGGTGAATAGATTTGGTATTTCTGACTGTTGCCACTATTCTCCAGCTTTCAGTGCTAATGGAAGTTCATCAGAGAATGCAAGAATTGGTCCACAGAGATATCATGATACAACTGGCAGCAGAAGTGGCCACAGATTTCCCCATCATCCTCCACAGTACCATAGCTTTCATCATCAAGTACAGCCTGCACAATTGATCAGAGGTCACTCCTTCAACATTCATCCTCCCCTAACTGCACCTTCGTATAGAGTTCCAACAAATCCTTCACACGGTTTTTCAATCCTCATGCATGATGCGTTTGAGATGGGTGCTAGGCGTCCTGGCTTTGCACCATTTGCAGGTGCTCGCATACACCTGTCTCATAGAGGCAACTTGCACGAGATGATAACTCTTATACATCAAAATCTTCCTCCTGCGGTCTTTTTTCCTGGTGATGATGTTGCTTTACTGGTTGACCATCATACTGATATGCACTTGGACACTGAAGATATGTCTTATGAGGCAAGTGAGCAGATTGGCAATGCAAAATCGGGTTTATCAGAGAAAACAATTACTAGTCAAATGAAGACCAAAACTTATATACTACCTACTAATGCAACTAACTTGGAGGAGGCAGCTTATAAGGAACAGGAAACTGATCTCTGCATAATATGCCTGGAAGAATATAAGAACAAAGAGAATATTGGAATTCTTCGATGCGAGCACGAATATCACGCAGATTGTTTTAGGAGATGGTTACTTGAGAAAAATGTCTGCCCCATGTGCAAATCAGTAGCATTGACTCCTGGAGAAAAACAATGA 801 0.4195 MVNRFGISDCCHYSPAFSANGSSSENARIGPQRYHDTTGSRSGHRFPHHPPQYHSFHHQVQPAQLIRGHSFNIHPPLTAPSYRVPTNPSHGFSILMHDAFEMGARRPGFAPFAGARIHLSHRGNLHEMITLIHQNLPPAVFFPGDDVALLVDHHTDMHLDTEDMSYEASEQIGNAKSGLSEKTITSQMKTKTYILPTNATNLEEAAYKEQETDLCIICLEEYKNKENIGILRCEHEYHADCFRRWLLEKNVCPMCKSVALTPGEKQ 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00003 266 Pfam Ring finger domain 214 256 IPR001841 -
Gma03g00003 266 SMART ring_2 215 255 IPR001841 -
Gma03g00003 266 MobiDBLite consensus disorder prediction 20 51 - -
Gma03g00003 266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 16 263 IPR045191 GO:0061630
Gma03g00003 266 MobiDBLite consensus disorder prediction 20 37 - -
Gma03g00003 266 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 16 263 - -
Gma03g00003 266 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Gma03g00003 266 SUPERFAMILY RING/U-box 207 260 - -
Gma03g00003 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 260 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00003 Gma-Chr3 131832 133090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00003 152 260 C3H Transcription Factor Family AT2G15530 38.938 4.87e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00003 K19041 - gmx:100780488 441.425