Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02907 ATGAAGAGGGAGTCTGATTGTGGCGAAGCGGGTTCTTCTTCTTGGTGTGTGGGAAAGAAGCAGAAGCAGAAGCAGAAGCGGTTAATGGAGGATGCAGGAGGGTGGAAGGGGAAGATATCATCATCATCGTCATCGTCGGAGCCACGTCCCTGTACCGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGCCACATGAGATGCCACCCGGAGCGTCACTGGAGAGGGATCAATCCTCCGCCAAATGTGATCAGGAGACAACAACAAATGACCCAGGAAGACCACGAGGTCGCTGCCTGTTTGCTCCTGCTTGCCAACGCcaaagacaaagacaaagacaaagacaaagaGGAAGATGTTCATTTCGAGTGCTCCAGTTGCAACAAGGTGTTTGGGTCCCACCAGGCTCTTGGAGGACACCGTGCCAGTCACAAGAACGTAAAGGGCTGTTTTGCCAATAATGCTGCCATAGGAACGTCGTCTAGTACTAGCGATCAGGAGAACATGATGATTCTTCATGGTCACAAGTGCAGCATTTGCCTCAGGGTTTTCTCTACTGGTCAGGCACTTGGTGGCCACAAGAGGTGTCACTGGGACAAAGGGGACAACCTCGGTCTCCTTGCAGACTCGTCATCCAAGTCTCTCTCTCTCGTCGACTTGAATTTCCCTCCCCCTTCCTTCTCCTCCCCCCTCGCTCTCGATTTGAGGTTGGGACTCTAG 726 0.5124 MKRESDCGEAGSSSWCVGKKQKQKQKRLMEDAGGWKGKISSSSSSSEPRPCTECGKKFWSWKALFGHMRCHPERHWRGINPPPNVIRRQQQMTQEDHEVAACLLLLANAKDKDKDKDKEEDVHFECSSCNKVFGSHQALGGHRASHKNVKGCFANNAAIGTSSSTSDQENMMILHGHKCSICLRVFSTGQALGGHKRCHWDKGDNLGLLADSSSKSLSLVDLNFPPPSFSSPLALDLRLGL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02907 241 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Gma02g02907 241 Pfam C2H2-type zinc finger 123 147 - -
Gma02g02907 241 Pfam C2H2-type zinc finger 50 73 - -
Gma02g02907 241 Pfam C2H2-type zinc finger 177 202 - -
Gma02g02907 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 71 IPR013087 -
Gma02g02907 241 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Gma02g02907 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Gma02g02907 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 199 IPR013087 -
Gma02g02907 241 MobiDBLite consensus disorder prediction 1 46 - -
Gma02g02907 241 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 39 241 - -
Gma02g02907 241 SUPERFAMILY beta-beta-alpha zinc fingers 48 146 IPR036236 -
Gma02g02907 241 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 39 241 - -
Gma02g02907 241 SMART c2h2final6 49 71 IPR013087 -
Gma02g02907 241 SMART c2h2final6 124 146 IPR013087 -
Gma02g02907 241 SMART c2h2final6 177 199 IPR013087 -
Gma02g02907 241 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Gma02g02907 241 Gene3D Classic Zinc Finger 121 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02907 Gma-Chr2 54460982 54461707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02907 49 241 C2H2 Transcription Factor Family AT4G35280 52.036 1.20e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma02g02907 zf-C2H2_6 4.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02907 - - gmx:100792631 438.728