Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02906 ATGGAGTATGGTGCGTTTGGGAGCTTGTCGGAGTGTGAAGAAGATTTGATCGAGGAGTTGCTGGAAAAAGGTTGCTGGGTGGAAACGAATGGGAGCAGCGAGGCACAGTACGACATAGAGCAAGAATTAGCCATGCCCATGGGGAAGACCACATGGTGGATTGGACCCAAGGGGCCTGTGTCTGGGTCATCTTCATCCGTGAAAGAGAGATTGGTGGTTGCGGTGGGCTACTTGAGAGAATACACAAAGAACAACAACGCCGCCAACGTGCTCATTCAGATATGGGTTCCCATACGGAGGATGACAGGCCTTCTCGCCATTGGCCTTGGGCCCGATGAGTCGGTTTCGGTTGCTTTTCCTTTTCCGACCAACATGAACATGAACATGAAGTCGAACGTAAACATTCGGTTCTTTAGAAGCCATGAGTACCCGCGAATTCCTTATGAATATGGATCCTTGGCACTTCCTGTCTTCGAAAGAGGCAGTGGCACATGCCTGGGTGTCCTCCAGATTGTAATGCCAGCAGCTCGCTGGGACACAATCAACTATCTCCCTCAACTTGACAATAATAATAATAATAATGCTTTCCAGGGCATGATTCCAGGTGGTGTTGTAAAGGTATTTGACGAGGATGAGGTGTACGAAGCATCAGTGAACGAGATGATGGAGGTGGTGAGGTGTGTGTGCAAGACGCAGAATGTGCCTTTGGCTCTGACATGGGCTCCTTGCGTCCAACAACTATGTGTGGATTGTGGGCATTCAAGGGATGAGAACAACTATGTGTCGATTGTGGACAGAGCGTGTTTTGTGGGGGATGGTCAGCCCCAGCTATTGGGGTTCCAGGAGGCCTGCTCTCAGCACCACCTTTTCCGCGGACAAGGAATTGTCGGTACGGCCTTCACAACTGCCAAGCCCTGTTTTGCTATGGACATAACCGCCTTCACCAAGGCCGAATATCCTCTCTCTCACCACGCCAACATCTTTGACTTGCATTCTGCCGTCGCTATTCCTCTAAGGACTTCTTCTTATCCCCATTTTGATTTTGTCTTGGAGTTCTTCCTTCCCAAACACTGCCCTGACCACAACCTCTTCCTCAACTCCTTATCTATTCTCCTTCAACAAGCTTGCCCCACCTTCCATCTTTCTGCTCCCATCCATGATGATGTATTTACCTCCTTGCCCTCTGAATCCCAGTCCCAGCAGGCTTCCTGGATCGCACATATGATTGATGCCCAATCCCAACACAAGGACAATGGGAAAGGTGTGTGCTTGTCCTTGGATTTCCTGGAAGAAGAACCCAAAGAGGAGTTCAAAGTCACAACAACTCACTGTAACTGGGACACCACTGCCACTAGTACTTATCATTCACACGACCATGTTGTGTTTTCAGATTTTGGGGAAGaatctcaatctcaatctcaatctcaaactcaCACATTTGGTGTGAAGCGTGGCAGAAAACCAGGAGAGAAGAGACGAACCAAGGCCGAGAAGACTATTAGCTTGCCAGTTCTAAGGCAATACTTTGCAGGAAGCCTAAAAGATGCGGCTAAGAGCATTGGCGTGTGTCCCACAACTCTGAAAAGGATATGCAGACAACATGGCATAACGCGATGGCCTTCAAGGAAAATAAAGAAGGTGGGGCACTCTTTGAAGAAACTACAACTTGTAATTGATTCGGTACAGGGTGCCGAGGGTGCCATACAGATCGGATCCTTCTATAACAGTTTTCCGGAGTTGAGCTCTAGAGCTTCTCAATCATCCTCTCCTGCAGCACAAAGCCCTCCTCATGTTCCTCAACAACCCTTGAGAGTGAAGGCTACTTTTGCGGATGAAAAAATCCGTTTTAGCTTGCAACCACTTTGGGGGTTCACAGAATTGCAGTTGGAAATTTCAAGGCGCTTCAACCTAAGCGATGTTAGCAACGCCAACAACGTGGTTCTAAAGTATTTGGATGATGACGGAGAGTGGGTTGTTTTAGCCTGCGATGGCGATCTTGAGGAGTGTAAAGACTTGCATACAACGTCTCAGAGCCGCACAATTAGACTCGCCCTATTTCAAGCTTCTCCTCTTAATAATCAACCAAATTCATATACTTTCGCCAACACCACCAGCACTCCTTCTTCTTAA 2130 0.4746 MEYGAFGSLSECEEDLIEELLEKGCWVETNGSSEAQYDIEQELAMPMGKTTWWIGPKGPVSGSSSSVKERLVVAVGYLREYTKNNNAANVLIQIWVPIRRMTGLLAIGLGPDESVSVAFPFPTNMNMNMKSNVNIRFFRSHEYPRIPYEYGSLALPVFERGSGTCLGVLQIVMPAARWDTINYLPQLDNNNNNNAFQGMIPGGVVKVFDEDEVYEASVNEMMEVVRCVCKTQNVPLALTWAPCVQQLCVDCGHSRDENNYVSIVDRACFVGDGQPQLLGFQEACSQHHLFRGQGIVGTAFTTAKPCFAMDITAFTKAEYPLSHHANIFDLHSAVAIPLRTSSYPHFDFVLEFFLPKHCPDHNLFLNSLSILLQQACPTFHLSAPIHDDVFTSLPSESQSQQASWIAHMIDAQSQHKDNGKGVCLSLDFLEEEPKEEFKVTTTHCNWDTTATSTYHSHDHVVFSDFGEESQSQSQSQTHTFGVKRGRKPGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYNSFPELSSRASQSSSPAAQSPPHVPQQPLRVKATFADEKIRFSLQPLWGFTELQLEISRRFNLSDVSNANNVVLKYLDDDGEWVVLACDGDLEECKDLHTTSQSRTIRLALFQASPLNNQPNSYTFANTTSTPSS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02906 709 ProSiteProfiles RWP-RK domain profile. 486 567 IPR003035 -
Gma02g02906 709 PANTHER PROTEIN NLP8 32 693 IPR045012 GO:0003700
Gma02g02906 709 MobiDBLite consensus disorder prediction 467 481 - -
Gma02g02906 709 Gene3D - 598 686 - -
Gma02g02906 709 ProSiteProfiles PB1 domain profile. 602 688 IPR000270 GO:0005515
Gma02g02906 709 Pfam RWP-RK domain 500 547 IPR003035 -
Gma02g02906 709 SMART PB1_new 602 688 IPR000270 GO:0005515
Gma02g02906 709 MobiDBLite consensus disorder prediction 467 496 - -
Gma02g02906 709 SUPERFAMILY CAD & PB1 domains 596 690 - -
Gma02g02906 709 PANTHER PROTEIN NLP2 32 693 - -
Gma02g02906 709 CDD PB1_NLP 603 687 IPR034891 -
Gma02g02906 709 Pfam PB1 domain 603 687 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02906 Gma-Chr2 54442625 54444994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02906 587 689 NLP Transcription Factor Family AT4G35270 48.214 3.26e-26 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma02g02906 PB1 2.7e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02906 - - gmx:100792100 1370.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00019 14 209690 211656 Gma02g02906 02 54442625 54444994 GST