Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02897 ATGTCACGAGTTGCAGTTGGCGGTTTTGCCAAAGCGTTTCCTTGGATGGAAAAGAGAGGTGTCAGTGCTGATGCTGAGCTCCAACTTGCTGATTTTGGGCCGGATCCTGCCCAGACATGTACTGGAAATGAAAAGGGTGACAAGGCCTTCCGGATTCCTCAGTCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCACGGTCACTAGATATTGCATTATCTACTTTTGCAAAGACTGATGGTCCTTTGGTTTCACGATCAAGTCCTGGTTCCACAAGAGGACTTCCCCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAGGTTTACTTCCTCAGAGGAGCTTCAAGATAAATACCTGTTCCCAGGATATTGAAAGGACAGGTCTCATAGTTCCTAACACTCCCCCATCAGATGCTCCTTTGGATAAACCTTCCTCTTCAACTCATCTGTCTCTTAATAATAAGGTTATCTCCCCATCAACAAAAGTTTCACATTCATTACCAGTTACTCCATTTGCAACTTCGGCTGCAGAGAATGGACACGGAAGACATTTAGGATGTGATTCTGGTTTAAGTACAATGGAAGTTCATCAGCATATGATGCGATCATTTTCAGTCCCAGTTAATGGCAAATCCACTAATTTAAGGGTTACAGATTCTAGGGGCTTGATTCGTGTAATTTCGGCAAAACCACATCGTGAAACTGTTGGTGGAAAGTCAACTGACGGGGCTTTCGTTCCAGAGATTGCCATTGAAGATGCTACTGAGGATATTCCAGAGGAACAAGCAGTCTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGAATGTGCAGTAAAGTGGTTTAGTATTAAGGGAAACAGGACCTGTGATGTCTGCAAGCAGGATGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTATAATCCTGAAACTCTTGCTAGGCAGGGATCAAATGTGTCACAACAGTCAGAAATAGTTTATTACAGGATCTGGCAGGATGTACCAGTACTTATCTTGGTCAGCATGCTTTCGTACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGATCTCATGCTCTTGCCATTTCATTACCATTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCATCAACCATGGTGAGCAGGAGTTTCGTATGGGCTTATGCTTGCTTCCAGTTTGCAATTCTCATCCTGTTATCTCATGTATTTTATACTATTCTCAATTTTAATGCAATTCTCTCCATTCTCCTTTCCTCATTCACTGGATTTGGGATTGCAGTCAGTATGAATTCTCTCATTATGGAATTCATTGGATGGAGAACTAGCAGGCGGGTTCAATCCTCCATTGAGAATGTTAACAGGACACAGCAGCAGCATCGTGAGCATGTGCAACAACAGGGACAGGAAGATGAAGGACAACATCACTTACAAAGACAACAAGAGCATCATCTGCCGCAGCATGGTAACAGTTGA 1554 0.4318 MSRVAVGGFAKAFPWMEKRGVSADAELQLADFGPDPAQTCTGNEKGDKAFRIPQSRRPNLSSLQIPARSLDIALSTFAKTDGPLVSRSSPGSTRGLPPRPNSAKVRSSMRGLLPQRSFKINTCSQDIERTGLIVPNTPPSDAPLDKPSSSTHLSLNNKVISPSTKVSHSLPVTPFATSAAENGHGRHLGCDSGLSTMEVHQHMMRSFSVPVNGKSTNLRVTDSRGLIRVISAKPHRETVGGKSTDGAFVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNPETLARQGSNVSQQSEIVYYRIWQDVPVLILVSMLSYFCFLEQLLVSDLGSHALAISLPFSCVLGLLSSMIASTMVSRSFVWAYACFQFAILILLSHVFYTILNFNAILSILLSSFTGFGIAVSMNSLIMEFIGWRTSRRVQSSIENVNRTQQQHREHVQQQGQEDEGQHHLQRQQEHHLPQHGNS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02897 517 MobiDBLite consensus disorder prediction 131 151 - -
Gma02g02897 517 ProSiteProfiles Zinc finger RING-CH-type profile. 260 322 IPR011016 GO:0008270
Gma02g02897 517 MobiDBLite consensus disorder prediction 490 509 - -
Gma02g02897 517 MobiDBLite consensus disorder prediction 81 96 - -
Gma02g02897 517 SMART ringv_2 267 316 IPR011016 GO:0008270
Gma02g02897 517 MobiDBLite consensus disorder prediction 81 108 - -
Gma02g02897 517 CDD RING_CH-C4HC3_MARCH 268 316 - -
Gma02g02897 517 SUPERFAMILY RING/U-box 264 319 - -
Gma02g02897 517 MobiDBLite consensus disorder prediction 479 517 - -
Gma02g02897 517 PANTHER OS02G0165000 PROTEIN 39 494 - -
Gma02g02897 517 PANTHER OS02G0165000 PROTEIN 39 494 - -
Gma02g02897 517 Pfam RING-variant domain 268 315 IPR011016 GO:0008270
Gma02g02897 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 323 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02897 Gma-Chr2 54310778 54317937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02897 251 322 C3H Transcription Factor Family AT2G37950 45.205 2.49e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02897 - - gmx:100789461 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00029 14 294508 301199 Gma02g02897 02 54310778 54317937 GST
Gma20g00638 20 24083710 24096565 Gma02g02897 02 54310778 54317937 PCT
Gma02g02897 02 54310778 54317937 Gma20g00638 20 24083710 24096565 PCT