Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02888 ATGGCGCAGCTTCCCTGCGACTCCGATGGCGTCTGCATGCTCTGCAAACAGAAACCCAGTCCCTCCCAAACCCTCTCCTGTAGAACATGTGCTACTCCCTGGCACCTTTCGTGTCTCCCTTCGGCCCCTCTCTCCCTCTCCGACTCACATTGGGACTGCCCCGACTGTTCCGACACCTCCAACCATTACCCCGTCGCTCCCACCGCCGACCTTGTCTCCGCCGTTCATGCCATTCAGGCCGACACCTCTCTCACTGACCAGGAGAAGGCAAAGAAACGTCAAGAACTCCTCGCTGGCTCTTCCGACTCCTCAAAGGACAAAGCCAAAACCAAAGACATTTTTGACGGAAGCTTAAATTGCTCCATATGCATGCAGTTACCGGAGAGGCCCGTCACGACACCTTGTGGGCACAACTTGTGTTTGAGATGTTTCGAGAAGTGGGTCGGACAGGGGAAGCGCACCTGTGCCAATTGCCGTGCTCAAATCCCGGCGAAGATGGCGAGTCAGCCGAGGATCAACTCTCAGCTGGCAATGGCCATCCGATTGGCGAAGGCGGCCAAGTCGGGAGAAGGGTCCTCGGGCCCACCCAAGGTGTACCACTTTGTCCGCAACCAGGACCGCCCCGATACCGCATTCACCACAGAGCGAGCCAAGAAGACTGGGAAAGCCAATGCTTGCAGTGGTAAGATTTTTGTGACTGTTCCTCCTGACCATTTTGGTCCCATCCCGTCTGAAAACGACCCCATCAGGAACCGCGGTGTTCTTGTTGGTGACACGTGGGAGGACAGGATGGAGTGTCGCCAGTGGGGTGCTCATTTGCCTCATGTTGCCGGCATTGCTGGACAGAGTGGCTATGGTTCCCAGTCTGTTGCCCTTTCTGGTGGTTACGAGGATGACGAGGATCACGGTGAGTGGTTCCTTTACACTGGCAGTGGTGGCAGAGATCTCAGTGGTAACAAACGAACCAACAAGCTTCAATCCTTTGACCAGAAGTTTGAAAACATGAACGAGGCCTTGAGAGTCAGCTGCAGGAAGGGTTATCCCGTTCGGGTTGTAAGGTCGCACAAGGAAAAGCGTTCTTCTTATGCACCGGAGTCTGGAGTGCGTTACGATGGAGTTTATAGAATAGAGAAATGCTGGCGCAAAAATGGAACACAAGGTTGCAAGGTTTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCCTGGACAAGTGATGAAATTGGAGATCGCCCACGCCCACTGCCTAAAATTGATGAGTTGAAGGGTGCGGTTGATATAACTGAAAGGAAGGGTGATCCATCGTGGGATTTTGATGAGGAAAAGGGGTCCTGGTTGTGGAAGAAGCCTCCACCAGAAAGCAAGAAATCAGTGGACATTAAAGCTGAAGATGGAACAACAATCAGAGTTAAACGGAAAGCAAAAAATGTGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATATGTCGCAAGGCGATGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCCAAAGTTTCATCAGAAATAGGGCATGTGGAGGTGGACGCACTTTACGAGCGCAGAAGAATTTTATGAAATGCCCATCATGTTCAACTGACATTGCTGACTTTCTCCAGAATCCACAGGTTAATAGAGAAATGCTGGCTGTTATAGAATCACTACAACGCCAGGCTGAAGATGAAAATTCTGAAGAGTCAAGTGATAAAAATGATGAAAATCTGCATGACCCAACTGAGGTTTCTAAACCTTGTGATTCTAGTGATAAGGTCCTGGAGGAAATTAAGGACAATGAGCTGAATCAGCCACACAAGCGAAGGAAAGAGTGA 1881 0.5045 MAQLPCDSDGVCMLCKQKPSPSQTLSCRTCATPWHLSCLPSAPLSLSDSHWDCPDCSDTSNHYPVAPTADLVSAVHAIQADTSLTDQEKAKKRQELLAGSSDSSKDKAKTKDIFDGSLNCSICMQLPERPVTTPCGHNLCLRCFEKWVGQGKRTCANCRAQIPAKMASQPRINSQLAMAIRLAKAAKSGEGSSGPPKVYHFVRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPSENDPIRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSGYGSQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRVSCRKGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKNGTQGCKVCRYLFVRCDNEPAPWTSDEIGDRPRPLPKIDELKGAVDITERKGDPSWDFDEEKGSWLWKKPPPESKKSVDIKAEDGTTIRVKRKAKNVSVKERLLKEFGCQICRKAMASPLTTPCAHNFCKACLEGAFSGQSFIRNRACGGGRTLRAQKNFMKCPSCSTDIADFLQNPQVNREMLAVIESLQRQAEDENSEESSDKNDENLHDPTEVSKPCDSSDKVLEEIKDNELNQPHKRRKE 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02888 626 SUPERFAMILY RING/U-box 113 166 - -
Gma02g02888 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 73 IPR013083 -
Gma02g02888 626 Pfam RING-type zinc-finger 491 546 IPR027370 -
Gma02g02888 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 601 IPR013083 -
Gma02g02888 626 MobiDBLite consensus disorder prediction 86 109 - -
Gma02g02888 626 Pfam Zinc finger, C3HC4 type (RING finger) 118 163 - -
Gma02g02888 626 ProSiteProfiles Zinc finger RING-type profile. 120 159 IPR001841 -
Gma02g02888 626 SUPERFAMILY RING/U-box 483 574 - -
Gma02g02888 626 SMART G9a_1 244 401 IPR003105 -
Gma02g02888 626 CDD RING-HC 120 158 - -
Gma02g02888 626 ProSitePatterns Zinc finger PHD-type signature. 12 56 IPR019786 -
Gma02g02888 626 MobiDBLite consensus disorder prediction 575 626 - -
Gma02g02888 626 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 605 IPR045134 -
Gma02g02888 626 ProSitePatterns Zinc finger RING-type signature. 506 515 IPR017907 -
Gma02g02888 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 186 IPR013083 -
Gma02g02888 626 ProSiteProfiles Zinc finger PHD-type profile. 9 59 IPR019787 -
Gma02g02888 626 SUPERFAMILY PUA domain-like 223 417 IPR015947 -
Gma02g02888 626 SMART ring_2 12 56 IPR001841 -
Gma02g02888 626 SMART ring_2 491 548 IPR001841 -
Gma02g02888 626 SMART ring_2 120 158 IPR001841 -
Gma02g02888 626 MobiDBLite consensus disorder prediction 573 626 - -
Gma02g02888 626 ProSiteProfiles YDG domain profile. 249 397 IPR003105 -
Gma02g02888 626 SMART PHD_3 11 57 IPR001965 -
Gma02g02888 626 Pfam SAD/SRA domain 252 400 IPR003105 -
Gma02g02888 626 SUPERFAMILY FYVE/PHD zinc finger 5 60 IPR011011 -
Gma02g02888 626 Gene3D - 220 415 IPR036987 -
Gma02g02888 626 ProSiteProfiles Zinc finger RING-type profile. 491 549 IPR001841 -
Gma02g02888 626 Coils Coil 562 589 - -
Gma02g02888 626 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02888 Gma-Chr2 54265664 54269323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02888 3 581 C2H2 Transcription Factor Family AT5G39550 62.098 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02888 K10638 - gmx:100786796 1291.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00038 14 346762 349957 Gma02g02888 02 54265664 54269323 GST