Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02871 ATGCAATCAGATAATGGCAAGTTATTTATCGGTGGAATATCATGGGACACAAATGAAGAGCGGCTCAGGGAGTATTTCTGTACTTATGGGGAAGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGGGGATTTGGTTTCGTTGTTTTTTCTGACCCAGCTGTTGCTGAAATAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGgttgaggcgaagaaagctgttcctagggatgatcagaacatactgagtagaaacagtggcagcatccatggttctcctggtccagGGAGTGGGAGTGTTGGAGGGAACACGTTTGGCAACACTGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGGCAGCAGGGAGGAGGGAACAATATGTCACAAAGTAGTGGCAACCTGGGATATGGAGGTGGTGACAACAGTTATGGTTTGGGGACTGGAGGATATGGAAGAAGCACTGGTGCCGCTTTTGCACCAACATCTTCATACTCTGCATCAAATGGCGGTGTTGATGGGGCTTTTGCAGACTTTTACAATAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTATGGATTTGGTGGCGTAGCTTCAGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTACACTGTTAATAAGAGGCAGCCAAATAGGGGAATCGCTACATAG 741 0.4062 MQSDNGKLFIGGISWDTNEERLREYFCTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGSGSVGGNTFGNTGVNWGSSAISGQQGGGNNMSQSSGNLGYGGGDNSYGLGTGGYGRSTGAAFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGFGGVASDVSAKSSPGYVGGYTVNKRQPNRGIAT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02871 246 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 103 - -
Gma02g02871 246 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 103 245 - -
Gma02g02871 246 MobiDBLite consensus disorder prediction 225 246 - -
Gma02g02871 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Gma02g02871 246 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 103 - -
Gma02g02871 246 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 103 245 - -
Gma02g02871 246 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gma02g02871 246 MobiDBLite consensus disorder prediction 87 140 - -
Gma02g02871 246 Gene3D - 4 88 IPR012677 -
Gma02g02871 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gma02g02871 246 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gma02g02871 246 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02871 Gma-Chr2 54116901 54121567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02871 8 55 C2H2 Transcription Factor Family AT2G19380 43.750 4.97e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02871 K14411 - gmx:100799330 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00061 14 521133 526054 Gma02g02871 02 54116901 54121567 GST
Gma13g00097 13 2941572 2944723 Gma02g02871 02 54116901 54121567 PCT
Gma02g02871 02 54116901 54121567 Gma13g00097 13 2941572 2944723 PCT