LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma02g02863	ATGCTCCCTCCACAACAGCAGTCACGGGTTGGAGGACTACAAACCTCTCTATCTCTAGTTTCTTCAGATCCCCGCCTTTCTCCCGAGGAGCCTAGATCAAACTCTGACAATCTCCGTGAATCTCCTACTGAAAGTGCCAGTTCTCGAGAAACTTGGCCTACTGCTGATGCAATTGCTGCAAAGAAGATGGAAAATGGAAAAGCAGAAATGGATTGCCCTGATCAGTCAGTTATTCGCTGTGTTTCTAGTGCAGACAAAATTAGTCTTCAGGACATTGCAAGAGAACGAGTTGATATAATATGTGAGAAAATGCATCATCTACCTGACGAATTTCTTGAAGAGCTGAAAAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGGCTCACAGCATAGAGAGGAATTTTTCATTTTGCAAAAGCTTGTTCAGAGTAGATCTGATTTAACAGCCAAGACATTGATAAGAGCACATCGTGTACAGCTAGAAATCCTTGTTGCAATAAATTCTGGAATTCAGGGATTTTTACATCCTAGCATCAGTCTATCACAGACATCGCTGATTGAAATATTTGTGTACAAGAGATGCAGAAACATAGCTTGCCAAAACCAACTTCCTGCTGAAGATTGTACCTGTGAGACGTGCGCCAATGGCAATGGTTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGACTGTGCCATACGTGAGCAACTTATTTGTATGGGCCCTTCTGCAAAGAATGGAGCAGGGCCAAGTGAAATCGTTTTCAGGTGTCAAGCATGCAACAGAACTTCAGAACTTCTGGGTTGGGTTAAAGATGTCTTCCAGCATTGTGCACCATCATGGGATGGAGAGGCCTTGATGAGGGAACTTGATTTCGTCAGTAGGATCTTTCATGGTAGTAAAGACCCGCGGGGGAGGAAACTTTATTGGAAGTGTGATGATCTCAAGGAAAAATTGAAAAGTGGAAAAGTGGAATCTAAGGCAGCATGCAGGGCAATATTGATGGTTTTCCAAGAGCTTGAGCTGGACTCTCCAAAGAGCCTGGAAAATGCAGAAAGTGGAAGGCTAATTGCTCCCCAGGAGGCATGCAATAGAATTGCTGAAGTGGTCCATGAGGCTATAAGAAAGATGGAAATAGTAGCTGATGAAAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTTTTGATGCTTGTGAACGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTGAAAATGGACAGGCAAAAAAAGAAGTTACAGATTGAAGAACTGGAGAGAATTGTGAGGCTTAAAAATGCAGAAGCTGATATGTTCCAGTTGAAGGCTAACGAGGCTAAAAGAGAGGCAGAGCGGCTCCAGAGGATTGCTCTTGCCAAGTCAGATAAATCAGAGGAAGAATATACTAGCAACTATTTGAAGCAAAAATTAAGTGAGGCTGAAGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAAACTTCTCGTGTATCACAGAGCAGTAGTGGGGTTGACCCCTCTTCAATGCTGGTGTATTCCAAAATCCATGATCTTCTCTACAGTGTTCCTCCCAAGGCAGACGGTCAATCTAATGAGTGCCACCCTTTCAGAACAAACCCATGA	1704	0.4325	MLPPQQQSRVGGLQTSLSLVSSDPRLSPEEPRSNSDNLRESPTESASSRETWPTADAIAAKKMENGKAEMDCPDQSVIRCVSSADKISLQDIARERVDIICEKMHHLPDEFLEELKNGLRVILEGGNGSQHREEFFILQKLVQSRSDLTAKTLIRAHRVQLEILVAINSGIQGFLHPSISLSQTSLIEIFVYKRCRNIACQNQLPAEDCTCETCANGNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSAKNGAGPSEIVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGRKLYWKCDDLKEKLKSGKVESKAACRAILMVFQELELDSPKSLENAESGRLIAPQEACNRIAEVVHEAIRKMEIVADEKMRMFKKARLAFDACERELADKAREAGELKMDRQKKKLQIEELERIVRLKNAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQKLSEAEAEKQYLYEKIKLQETSRVSQSSSGVDPSSMLVYSKIHDLLYSVPPKADGQSNECHPFRTNP	567

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma02g02863	567	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	1	557	IPR004082	-
	Gma02g02863	567	PIRSF	UCP025218	1	552	IPR004082	-
	Gma02g02863	567	Coils	Coil	433	488	-	-
	Gma02g02863	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	103	125	IPR004082	-
	Gma02g02863	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	145	160	IPR004082	-
	Gma02g02863	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	160	175	IPR004082	-
	Gma02g02863	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	186	207	IPR004082	-
	Gma02g02863	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	232	252	IPR004082	-
	Gma02g02863	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	305	324	IPR004082	-
	Gma02g02863	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	448	468	IPR004082	-
	Gma02g02863	567	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	487	509	IPR004082	-
	Gma02g02863	567	MobiDBLite	consensus disorder prediction	1	54	-	-
	Gma02g02863	567	MobiDBLite	consensus disorder prediction	38	52	-	-
	Gma02g02863	567	Pfam	PHD - plant homeodomain finger protein	195	318	IPR032881	-
	Gma02g02863	567	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gma02g02863	567	Pfam	Coiled-coil region of Oberon	413	546	IPR032535	-
	Gma02g02863	567	PANTHER	PROTEIN OBERON 2	1	557	-	-
	Gma02g02863	567	CDD	PHD_OBE1_like	225	284	-	-
	Gma02g02863	567	SMART	PHD_3	225	285	IPR001965	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma02g02863	Gma-Chr2	54035466	54037578	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma02g02863	195	297	PHD Gene Family	AT5G57380	30.769	8.33e-09	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma02g02863	-		-	gmx:100795450	1134.4