Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02842 ATGCAATCTAAATCTGAAACTGCAAATCAACTGAGGTCTGATCCACATTCCTTTACACCTAACAATGCTTATTCTGAACCCTGGTGGCGAGGTATTCAGTACAATCCTGTCCCCCAAGCAATGTTAGGAGTGAATGCATCTAATTCATCTTCACTTGAACGCCCTAATGGTGATTCGGAATCCAGTGAAGAGGATGATGATGCCACTAAAGAATCACAACCCACTGCTCCTAATCAATCAGGAAATTATGGACAGGACCACCAAGCGATGCAACATTCTTCATCATCTGCACCTTTGGTACGTGATGATTGCCTTACACAGGCTCCACAAGTGGAACTTGTTGGCCACTCAATTGGATACACTCCTTTTATAGGAATGCCCCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCCCGGCATCAGCATGCTATAAGAAGAGCACGAGGTAATGGAGGGCGTTTTGCAAAGAAAACTGAAGTTGAGGCTTCAAACCACATGAACAAGGAAAAGGATATGGGTACTGGCCAGGTCCCATTGTCACGGTCAATTAGTTCATCTGGTTTTGGATCACTACCCTCTGACTCTGCTGAGACCTGGAATTCTCCTAGTGTGCAACAAGATGCAAGAGGATCTCAAGTGCATGAGAGATTTGAAGAACGCAACTATGCAAATGTTTTGCAGTCATCATCTACTTTTTGTTTGCACTCGGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAACAACGGGGAAGCATCTTGTCAGAGCACACCTCACAGAGGCGTCTTGCTATTCAGTAA 924 0.4459 MQSKSETANQLRSDPHSFTPNNAYSEPWWRGIQYNPVPQAMLGVNASNSSSLERPNGDSESSEEDDDATKESQPTAPNQSGNYGQDHQAMQHSSSSAPLVRDDCLTQAPQVELVGHSIGYTPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAIRRARGNGGRFAKKTEVEASNHMNKEKDMGTGQVPLSRSISSSGFGSLPSDSAETWNSPSVQQDARGSQVHERFEERNYANVLQSSSTFCLHSGERVEEGDCSGQQRGSILSEHTSQRRLAIQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02842 307 MobiDBLite consensus disorder prediction 40 98 - -
Gma02g02842 307 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 38 298 - -
Gma02g02842 307 MobiDBLite consensus disorder prediction 40 56 - -
Gma02g02842 307 MobiDBLite consensus disorder prediction 72 98 - -
Gma02g02842 307 MobiDBLite consensus disorder prediction 278 307 - -
Gma02g02842 307 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 38 298 IPR001289 GO:0003700|GO:0006355
Gma02g02842 307 MobiDBLite consensus disorder prediction 1 28 - -
Gma02g02842 307 MobiDBLite consensus disorder prediction 289 307 - -
Gma02g02842 307 MobiDBLite consensus disorder prediction 224 251 - -
Gma02g02842 307 PRINTS CCAAT-binding transcription factor subunit B signature 141 163 IPR001289 GO:0003700|GO:0006355
Gma02g02842 307 PRINTS CCAAT-binding transcription factor subunit B signature 172 195 IPR001289 GO:0003700|GO:0006355
Gma02g02842 307 ProSitePatterns NF-YA/HAP2 subunit signature. 143 163 IPR018362 GO:0003677|GO:0016602
Gma02g02842 307 ProSiteProfiles NF-YA/HAP2 family profile. 138 198 IPR001289 GO:0003700|GO:0006355
Gma02g02842 307 SMART cbf3 137 198 IPR001289 GO:0003700|GO:0006355
Gma02g02842 307 MobiDBLite consensus disorder prediction 224 255 - -
Gma02g02842 307 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 140 195 IPR001289 GO:0003700|GO:0006355
Gma02g02842 307 Gene3D - 138 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02842 Gma-Chr2 53888936 53892862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02842 1 307 CCAAT-HAP2 Transcription Factor Family AT3G20910 42.433 7.41e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma02g02842 CBFB_NFYA 5.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02842 K08064 - gmx:102664020 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00095 14 794578 796711 Gma02g02842 02 53888936 53892862 GST
Gma18g00658 18 6684646 6688182 Gma02g02842 02 53888936 53892862 PCT
Gma08g03116 08 47868013 47871555 Gma02g02842 02 53888936 53892862 PCT
Gma02g02842 02 53888936 53892862 Gma18g00658 18 6684646 6688182 PCT
Gma02g02842 02 53888936 53892862 Gma08g03116 08 47868013 47871555 PCT