Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02793 ATGGATTCTCCCTACACAAGAATAGTCTTTGATAAAATTCAGAAATTTGAGCCAGAGCATGCTAGAAAAATAATTGGCTATCTCTTCTTTCAAGGTCATGGAGAACAAGAAATGGCTAAATTGGCTTCATGCCCCGACTATTTTATCTGTGAAGTGGTAGTTCAGGCCAAAAAGGAACTCCAAAGGTTGGCTGCTAAACCAGATATGCTCCCGATTTCTCGTACTGTCAACCCTCAACAAGGTTTAAGTGATTTATCAGTAATCTCCCCTAGAACTCCTACTTCACCAAACTTTCAGATGCCTCCTCCCTATTGGGATCCACAATCTGCTGCAAACATCAATCCAGACTTTATGGGAATGAATTACTTGGATTCTATTGTAGAACTTCAGAAGCAGACACAGATGCTCACTTTGGAGAATCAAATAGATGCTGTAAAAACTGGGACTGGAGGAATTGCCAATGATCACTATGGCTTAGATGCTTCTGCTGCCAATTTGGGTGGGAGAAGGTTTTCTGAATTTCCAATGAAGATGTGTCACTATTTCAACAAAGGATTCTGTAAGCATGGAACTAGCTGCAGATTCTATCATGGGCAAGTTGTCCCTGAGAATTTCTCTCAGATGCATGCAAATGATGCTATTGGTGAGGATCAGGTGATTTCCCCAGGGTCACTGGCTCAGTTAGAGTCTGAAATTATTGAGCTCCTAAGAGCAAAAGGCGGTCCAATGTCAATTGCTTCCCTGCCAATGGCATACTACGATAAATATAAAAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGTCAGAGGCATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTTGCACGACTGAAAAATAGTATTCAGCTAATAGGCAGACCTCATGGGCAGCATTCAGTGGTTCTGGCAGAAGATTCTCCCACACAAATGCAAAAGGGAGATTTTGCTCGAAATATCAGTGCTTCATACCAAATATATCTGACGTTCCCAGCTGACAGCACTTTCACAGAGGATGATGTCTCAAACTACTTCAACACTTTTGGACCTGTTGCAGATGTCAGAATTCCAAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTCATTCAGAAACTGTCAAAAGTGTTTTGGATAAGGGGAATCCCCATTGTGTTCGGGGTTCTCGGGTGCTTGTGAAACCTTACCGGGAGAAGGCAAAGGTTAATGAAAGGAAGTACACAGATAGAATTGAGCACCCTATTTGTTATTCACCACACTATCTAGATATGGACGCTGAACTTAACTCAATTCCAAGAAGTTTTGGGAGCCATGGATCCATTAGGAGACACCTACAACTAATTGAACAGGAAGAGCAGGAGCAAGCTCTGGAACGTCAGAGAAGTCTTGCACAGCTGCATTTTGCCCAAAAATCTTTCTTCAGTTCACCTCATTTTGGCTTCTCCATGGATGAGTCAAGGATTTCAGATGATCACTTCAATTTCCAGCCAGCAGAAGAATCTTTCAGTTTTCCACTGCATGTCAAATCCAGGCATACAGACTCCAATTACTCTGATGAGGACAGCAATGAAGGACTCAATCTCCCGGACAGTCCATTTGCATTTCCACTAGATAGATAG 1626 0.4213 MDSPYTRIVFDKIQKFEPEHARKIIGYLFFQGHGEQEMAKLASCPDYFICEVVVQAKKELQRLAAKPDMLPISRTVNPQQGLSDLSVISPRTPTSPNFQMPPPYWDPQSAANINPDFMGMNYLDSIVELQKQTQMLTLENQIDAVKTGTGGIANDHYGLDASAANLGGRRFSEFPMKMCHYFNKGFCKHGTSCRFYHGQVVPENFSQMHANDAIGEDQVISPGSLAQLESEIIELLRAKGGPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIQLIGRPHGQHSVVLAEDSPTQMQKGDFARNISASYQIYLTFPADSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFVHSETVKSVLDKGNPHCVRGSRVLVKPYREKAKVNERKYTDRIEHPICYSPHYLDMDAELNSIPRSFGSHGSIRRHLQLIEQEEQEQALERQRSLAQLHFAQKSFFSSPHFGFSMDESRISDDHFNFQPAEESFSFPLHVKSRHTDSNYSDEDSNEGLNLPDSPFAFPLDR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02793 541 ProSiteProfiles OST-type HTH domain profile. 224 306 IPR025605 -
Gma02g02793 541 SUPERFAMILY CCCH zinc finger 175 198 IPR036855 GO:0046872
Gma02g02793 541 SMART rrm1_1 326 396 IPR000504 GO:0003723
Gma02g02793 541 SUPERFAMILY RNA-binding domain, RBD 335 407 IPR035979 GO:0003676
Gma02g02793 541 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 540 - -
Gma02g02793 541 Gene3D - 171 231 - -
Gma02g02793 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 392 IPR000504 GO:0003723
Gma02g02793 541 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 540 - -
Gma02g02793 541 Pfam OST-HTH/LOTUS domain 224 302 IPR025605 -
Gma02g02793 541 CDD RRM_AtC3H46_like 327 396 IPR034365 -
Gma02g02793 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 400 IPR000504 GO:0003723
Gma02g02793 541 Gene3D - 332 406 IPR012677 -
Gma02g02793 541 ProSiteProfiles Zinc finger C3H1-type profile. 173 200 IPR000571 GO:0046872
Gma02g02793 541 MobiDBLite consensus disorder prediction 515 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02793 Gma-Chr2 53524026 53528496 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02793 - - gmx:100810174 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02793 02 53524026 53528496 Gma02g02793 02 53524026 53528496 ECH
Gma18g00740 18 7854339 7857345 Gma02g02793 02 53524026 53528496 PCT
Gma08g03039 08 46987166 46991711 Gma02g02793 02 53524026 53528496 PCT
Gma02g02793 02 53524026 53528496 Gma18g00740 18 7854339 7857345 PCT
Gma02g02793 02 53524026 53528496 Gma08g03039 08 46987166 46991711 PCT