Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02785 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACCGATGACGAACGTCTCAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCAGTGATCATGAGAGATCGGACAACAGGCCGTGCTCGTGGTTTCGGATTTGTTGTCTTTGCTGATCCTTCTGCTGCGGAGAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAgttgaagccaagaaagctgttcctagggatgatcagcaaactataaacagacagactgtcagccctggcgcttacttGGGATCTGGAAGTGGGACTTTTGGTGTTTCAATTGGAAATGCTGGCACCAATTGGGGTCCATCAGTTCCAACCCAGGGTGGAGGGGCTGCCTCTGGGTATAGTACTTGGGGCTCTTATGAAGGTGGAGATAACAGCATTGGTTTAGGAGGTGGAGGGTATGGAAGGAACAGCAGCCCAAGTGTGCCTCAATCCTCAACATTTACTGCACCAACTGGTGATTATGAAGGATCCTATGGGGACTTGTACCGCAATGGTTCAGTTTACAGTGACTCAACTTTGCGGTCTGCTGCTTCTGAGATAGATGCTTCTGGTTCGTTTGGTTATGGTGGACTTGGTGGTATAGCTTCAGATGATCTAGTAAAGAGTTCTGAGGGTTTTATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGAATTGCTGCTTAG 732 0.4153 MESDLGKLFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMDKHIIDGRTVEAKKAVPRDDQQTINRQTVSPGAYLGSGSGTFGVSIGNAGTNWGPSVPTQGGGAASGYSTWGSYEGGDNSIGLGGGGYGRNSSPSVPQSSTFTAPTGDYEGSYGDLYRNGSVYSDSTLRSAASEIDASGSFGYGGLGGIASDDLVKSSEGFIGNYNVISRQTNRGIAA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02785 243 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 94 243 - -
Gma02g02785 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Gma02g02785 243 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 94 243 - -
Gma02g02785 243 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Gma02g02785 243 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gma02g02785 243 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 94 - -
Gma02g02785 243 Gene3D - 6 88 IPR012677 -
Gma02g02785 243 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gma02g02785 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gma02g02785 243 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02785 Gma-Chr2 53462119 53464661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02785 4 95 Eukaryotic Initiation Factors Gene Family AT3G16380 28.723 1.26e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02785 K14411 - gmx:100814628 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02785 02 53462119 53464661 Gma02g02785 02 53462119 53464661 ECH
Gma14g00152 14 1221978 1228631 Gma02g02785 02 53462119 53464661 GST
Gma18g00746 18 7957812 7960969 Gma02g02785 02 53462119 53464661 PCT
Gma08g03034 08 46916056 46919106 Gma02g02785 02 53462119 53464661 PCT
Gma02g02785 02 53462119 53464661 Gma18g00746 18 7957812 7960969 PCT
Gma02g02785 02 53462119 53464661 Gma08g03034 08 46916056 46919106 PCT