Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02781 ATGCCGGACCAAGATATTTGCAGTTACATTAATGAACCTCGTCTTGTAGCCAGAAAGTTCTTGGCCAGACCTCAGCATGAGGGTGTTGGGGCTGTTGTTAGAAGAAGCATAGGGAGATTTGAGCTCAAGTACTTTGATCCTTTCATTGTCTTGGATGAATTCTCAGTCACCGCTCCTGCTGGGTTTCCTGATCATCCACATAGAGGTTTGCCAATTGGATTTTCTGTGTCATTTATGTTATCAATTCAGGGAGCTATAACGCATGAAGATTTTGAAGGACATAAGGGAACAATTGAAGCTGGTGACTTGCAATGGATGACTGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTGCAGCTCAAGGAACCGAAAAGGGTCTCCAGCTGTGGATCAACCTTGCTTCAAAACATAAAATGATTGAGCCAAGGTACCAGGAAATGTTGAGCAAGGACATAGCTGAAACTATGATAGATGGTATCAAAGTTAGAGTTATAGCAGGGGAAGCTCTTGGAATAAAGTCACCAATCTACACAAGGACACCAACCATGTACTTGGATTTTACTCTTAAACCTGGTGCTCACTTGCAACAAATTATACCAAAATCTTGGAATGCTTTTGTGTACATATTGGAAGGAGAGGGTGTTTTTGGAAACCAAAAATCCCAACCTGTGACCTCTCACCATATACTTCTTCTTGGTTCTGGGGATGGCCTGGAGGCATGGAACAAATCTTCTAAGGTCCTTAGGTTCATTTTGGTTGGAGGTGAACCATTGGGTGAATCTGTGGTGCAATTTGGACCTTTTGTGATGAATACTCAAGAAGAGATTGACCAAACAATTGATGATTTTGAGAACTATACCAACGGATTTGAGAAAGCTAGACATTGGAGGGTCACCCACACAACCACTTTCTCCCTCATCATCGCTCGCTCAATCGAGGTCTTCTCGATTTCCTTCTCTACAACACAACACAACACAACGCTCTCTTCTCTTCTCTTGCAACCAAATTACAACTTGTTCCACTCTCTACTACTCTATAAGGATTTGATTTGGGACATGTGCAGTGATTCAAAAAGTAAACTACTTTCTTCCCCAACCCTCGTCATGGAGGATGGTCTCTACAACAACTCGGTTTTGCTTGAATTGTCTGCATCTGATGATTTTGAAGCTTTCAAAAGAGAGGTGGATGAAAAGGGCTTAGATGTGAACGAGGCAGGCTTATGGTATGGTAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAACCAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCGCTAAGGTGCTCAATTGTATTCTTCTTGAGAAGAAAGGAGGAGGTGTTGATGTGAACAGGGTCTGTGGTTCTGATAGGGCCACAGCTCTACATTGTGCGGTTGCCGGGGGCTCTGAATCCTCACTTGAGATTGTCAAGCTCTTGCTTGATGCTGGGGCTGATGCCGAGTGCCTTGATGCCAGTGGCAACAAGCCGGTCAATCTGATTGCTCCTGCCTTTGATTCTTTGTCAAAATCGCGAAGGAAGGCCATGGAGATGTTCCTCAGGGGTGGTGGGGAAAGAGACGATGAACTCATGAGCCAGGAGATTCAAGAGAGAAAAGAAGCAATTAGTGATAATAAGAAAGAATACCCTGTTGATATATCACTGCCAGACATAAACAACGGTGTATATGGAACAGATGATTTTAGGATGTACAACTTCAAGGTGAAGCCTTGCTCAAGGGCTTACTCCCATGACTGGACCGAGTGTCCATTCGTTCACCCAGGGGAGAACGCTAGGAGGAGAGACCCACGGAAATACCCTTACAGCTGTGTTCCTTGCCCAGAGTTCCGCAAAGGGACCTGCCAGAAGGGTGATTCCTGTGAGTATGCTCATGGTGTTTTTGAGTCCTGGCTGCATCCTGCCCAATACCGGACAAGGCTTTGCAAGGATGAGACTGGCTGCGCTAGAAAAGTCTGCTTCTTTGCCCACAAACCTGAAGAGCTACGCCCTGTCTATGCTTCCACTGGCTCGGCTATGCCATCACCAAAATCATATTCAGCTAGTGGACTTGACATGACTGCCATGAGTCCATTGGCTCTAAGTTCCACATCTTTGCCTATGCCCACCGTTTCAACCCCACCCATGTCTCCCTTGGCAGCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATTAACCTTACTCCTCCATCGTTGCAGCTTCCTGGTAGCCGACTGAAGGCTGCTCTGAGTGCCAGGGATCTGGAGATGGAGATGGAACTGCTCGGCCTAGAAAGCCCTGCCCGCCACCACCACCACCACCAACAACAACAACAACAACAACTGATTGAAGAGATTGCTAGGATCTCTTCCCCTTCTTTCCGGAGCAAGGAATTCAATAGGATTGGTGATTTGAATCCTACTAACCTTGATGACCTGTTATTAGCATCTGCCGACCCTTCTGTATTATCTCAACTACAAAGTGGGCTTCAGATGCGGCAAAGCATGAACAACCACCTCCGTGCGAGTTATCCATCCAACGTCCCTTCCTCTCCTGTGAGGAAGCCCTCATCTTTTGGGTTTGACTCATCAGCTGCTGTGGCAACTGCAATGATGAATTCCAGGTCCGCCGCGTTTGCAAAGCGAAGCCAAAGTTTCATCGATCGTGGAGCTGCTGCAACCCACCACCATCTTGGGGGGATGTCTTCCCCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGGTTGGAGTTCCCCTACCGGGAAACTGGATTGGGGCGTAAATGGAGATGAGCTGAACAAGCTGAGGAAATCTGCTTCCTTTGGTTTCAGAAACAGTGGGGTAACTGCATCATCATCATCATCCCCCATAGCACAGCCAGAATTTGGCACCGAGCAGGATGTCTCGTGGGTTCATTCATTGGTTAAAGATGTTCCCTCCGAGAGGTCTGagaagcaacaatatgatcatctcagcaaagagatgcttctttcaccatgggtagaagcaacaatatga 3033 0.4586 MPDQDICSYINEPRLVARKFLARPQHEGVGAVVRRSIGRFELKYFDPFIVLDEFSVTAPAGFPDHPHRGLPIGFSVSFMLSIQGAITHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGTEKGLQLWINLASKHKMIEPRYQEMLSKDIAETMIDGIKVRVIAGEALGIKSPIYTRTPTMYLDFTLKPGAHLQQIIPKSWNAFVYILEGEGVFGNQKSQPVTSHHILLLGSGDGLEAWNKSSKVLRFILVGGEPLGESVVQFGPFVMNTQEEIDQTIDDFENYTNGFEKARHWRVTHTTTFSLIIARSIEVFSISFSTTQHNTTLSSLLLQPNYNLFHSLLLYKDLIWDMCSDSKSKLLSSPTLVMEDGLYNNSVLLELSASDDFEAFKREVDEKGLDVNEAGLWYGRRIGSKKMGSETRTPLMIASLFGSAKVLNCILLEKKGGGVDVNRVCGSDRATALHCAVAGGSESSLEIVKLLLDAGADAECLDASGNKPVNLIAPAFDSLSKSRRKAMEMFLRGGGERDDELMSQEIQERKEAISDNKKEYPVDISLPDINNGVYGTDDFRMYNFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTAMSPLALSSTSLPMPTVSTPPMSPLAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLESPARHHHHHQQQQQQQLIEEIARISSPSFRSKEFNRIGDLNPTNLDDLLLASADPSVLSQLQSGLQMRQSMNNHLRASYPSNVPSSPVRKPSSFGFDSSAAVATAMMNSRSAAFAKRSQSFIDRGAAATHHHLGGMSSPSNPSCRVSSTLSGWSSPTGKLDWGVNGDELNKLRKSASFGFRNSGVTASSSSSPIAQPEFGTEQDVSWVHSLVKDVPSERSEKQQYDHLSKEMLLSPWVEATI 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02781 1010 SMART ANK_2a 459 491 IPR002110 GO:0005515
Gma02g02781 1010 SMART ANK_2a 421 454 IPR002110 GO:0005515
Gma02g02781 1010 Gene3D Jelly Rolls 153 258 IPR014710 -
Gma02g02781 1010 ProSiteProfiles Ankyrin repeat profile. 459 494 IPR002110 GO:0005515
Gma02g02781 1010 Pfam Ankyrin repeat 462 489 IPR002110 GO:0005515
Gma02g02781 1010 CDD cupin_pirin_C 181 257 - -
Gma02g02781 1010 SUPERFAMILY RmlC-like cupins 14 299 IPR011051 -
Gma02g02781 1010 Gene3D - 374 521 IPR036770 -
Gma02g02781 1010 SUPERFAMILY Ankyrin repeat 372 502 IPR036770 -
Gma02g02781 1010 Gene3D - 610 672 - -
Gma02g02781 1010 SMART c3hfinal6 644 667 IPR000571 GO:0046872
Gma02g02781 1010 SMART c3hfinal6 609 635 IPR000571 GO:0046872
Gma02g02781 1010 CDD cupin_pirin_N 31 133 - -
Gma02g02781 1010 Pfam Pirin 33 131 IPR003829 -
Gma02g02781 1010 ProSiteProfiles Ankyrin repeat region circular profile. 459 493 - -
Gma02g02781 1010 PANTHER UNKEMPT FAMILY MEMBER 370 1008 IPR045234 -
Gma02g02781 1010 Pfam Pirin C-terminal cupin domain 184 288 IPR008778 -
Gma02g02781 1010 Gene3D Jelly Rolls 27 284 IPR014710 -
Gma02g02781 1010 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 370 1008 - -
Gma02g02781 1010 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 614 634 IPR000571 GO:0046872
Gma02g02781 1010 ProSiteProfiles Zinc finger C3H1-type profile. 609 636 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02781 Gma-Chr2 53423139 53434635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02781 355 988 C2H2 Transcription Factor Family AT5G12850 39.459 7.64e-129 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma02g02781 Pirin_C 1.9e-32 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02781 - - gmx:100812481 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02781 02 53423139 53434635 Gma02g02781 02 53423139 53434635 ECH
Gma14g00156 14 1255156 1258263 Gma02g02781 02 53423139 53434635 GST
Gma18g00757 18 8128859 8138237 Gma02g02781 02 53423139 53434635 PCT
Gma08g03026 08 46850059 46853561 Gma02g02781 02 53423139 53434635 PCT
Gma02g02781 02 53423139 53434635 Gma18g00757 18 8128859 8138237 PCT
Gma02g02781 02 53423139 53434635 Gma08g03026 08 46850059 46853561 PCT