Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02739 ATGCCTTCGGCTCAAGATCCATTCTACGTTGTCAAGCAAGAAATTCAAGAATCTATTGATAAGCTAAAATCCACTTTTCACCAATGGGAAAACACTGCTGATGTTGGCGAGCGATCCAGTCTATCAAAGGAAGTTCTTGCTAGTTGTGAAAGCATTGCATGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTGGCTGCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGGTTGAAAACCGGAGGAAGTGGACCAGTGATGCTCGCACCCAGgtgagcaaagcaaagagaacagtggaagctggaAAGGGCTCAAACAATGCTAGTCTAAGTGGGATGCACAGGGAATTAATGAGGCTTCCTAGTTCTCATCAAACTACATCTAACCAATATGCTGCCCAGGATAATGATGATTTCATAGAGTCAGAATCAGACAGGCAGATGCTTCTTATAAAGAGACAAGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTACAAAGAATTGGAGGTGTTGGACTTACTATACATGAAGAGCTCCTTGCGCAGGAAAAGATTATTGATGAACTTGGCAATGAGATGGATGGTACATCTAATCGCCTAGATTTTGTCCAGAAAAAAGTGGCAATGGTCATGAAGAAGGCTAGCGCAAAGGGCCAGATCATGATGATATTGGGTTTGTTGGCGATGTTTATTTTCCTCTTCATCTTGGTATTCTTCACCTAG 729 0.4047 MPSAQDPFYVVKQEIQESIDKLKSTFHQWENTADVGERSSLSKEVLASCESIAWQVDELDKAISVAARDPSWYGIDEVEVENRRKWTSDARTQVSKAKRTVEAGKGSNNASLSGMHRELMRLPSSHQTTSNQYAAQDNDDFIESESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELLAQEKIIDELGNEMDGTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLAMFIFLFILVFFT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02739 242 MobiDBLite consensus disorder prediction 91 111 - -
Gma02g02739 242 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Gma02g02739 242 Gene3D - 2 104 - -
Gma02g02739 242 SUPERFAMILY SNARE fusion complex 148 212 - -
Gma02g02739 242 Coils Coil 12 32 - -
Gma02g02739 242 PANTHER SYNTAXIN PROTEIN 1 241 - -
Gma02g02739 242 PANTHER SYNTAXIN 1 241 IPR045242 -
Gma02g02739 242 SMART tSNARE_6 145 212 IPR000727 -
Gma02g02739 242 Coils Coil 188 208 - -
Gma02g02739 242 Gene3D - 157 221 - -
Gma02g02739 242 Pfam SNARE domain 187 238 IPR000727 -
Gma02g02739 242 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020|GO:0016192
Gma02g02739 242 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 150 212 IPR000727 -
Gma02g02739 242 CDD SNARE_Qc 153 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02739 Gma-Chr2 53064008 53067960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02739 55 242 SNARE and Associated Proteins AT1G28490 68.421 4.32e-89 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02739 K08500 - gmx:100795447 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00201 14 1693365 1699540 Gma02g02739 02 53064008 53067960 GST
Gma18g00830 18 9636771 9640321 Gma02g02739 02 53064008 53067960 PCT
Gma08g02972 08 46225540 46229675 Gma02g02739 02 53064008 53067960 PCT
Gma02g02739 02 53064008 53067960 Gma18g00830 18 9636771 9640321 PCT
Gma02g02739 02 53064008 53067960 Gma08g02972 08 46225540 46229675 PCT