Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02727 ATGAGAAGACCGAAATCGAGGGAGTTTCGGAAGCAACAGCGAGTTTCAGAGGAGGAAGAGATAAACCTCTTGAATTCATGGATCCAGTTCCAGCCACCGGATTCCGGTTCGAACCCAATGTCGCTTCCGCCTCTCCCCAAAAACTCCCCCGTTGGCCGCCTCGACGACGACGACACCTACTCGCGCTACGCCGGCGCGTCGAGGTTCGAGCAATTCCCGCTTTCCAAGAAAACAAAGGACGCCCTGCGAGAATCCAAGTTCGTGGTCATGACCGACATCCAGAGAGCGTCTCTCCCCCACGCGCTCTGTGGCCGCGACATCCTCGGCGCCGCCAAAACTGGCTCCGGTAAAACCCTCGCTTTCATTATCCCTGTGTTGGAGAAGTTGCATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATCATATCTCCTACGAGAGAATTGGCTGCTCAGCTGTTTGATGTGTTGAAGGTTGTTGGCAAACACCATAATTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAAGACGTTGACATGGAGAAAGAACGTGTAAATGAGCTCAACATATTGATTTGCACGCCAGGTAGACTGCTGCAACACATGGATGAAACTCCCAACTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAAGCTGATCGGATTCTAGACAGTGGGTTCAAGAAGGAACTAAATGCAATCATTTCCCAACTACCAAAGCGTAGACAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTCGCAAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTGCACGAAGAATCTGTGACTTCCACTCCTACTCTGTTGAAGCAAATCGTGATGATTGTTCCCCTGGAACAGAAGTTAGATATGTTGTGGAGTTTCATAAAGACACATCTACAGTCCAAAACACTTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAATTGCACCCTGGCATACCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTTTCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCTTCTTACATACATAGAGTTGGTCGCACTGCTCGATATAAATCTGATGGAAAGTCAGTTTTATTTCTGTTGCCTTCAGAAATTCAAATGCTTGAAAAGTTAAAAGCCGCAAAGGTTCCAGTGCATTTTAATAAGccaaggaaagaactactgcaaccagtttctagcttgttggcatctttattggtcaaatacccagacatgcagcatcgggctcaaagggcattcatcacatatttgagatccatccatatccaaaaggataaagacatatttgatGTTATGAAACTACCTATTGACGAGTATTCAGCATCATTAGGTTTACCAATGACCCCCAAAATCCGTTTTCTAAATCAGAAAATTAAATCTAAAGATGTGTCAACAAAATCAATTTTAGTTGAACCAGAGGATTCAGACAAGGAAACTATCTTTGAGGTTTCAAGGAAGAAGCTAGACACAGTTGCTTTCAAGGATGAGGAAACCGAAAATGATCTTCTTCAGTTAGCTGATACTGCAAATGAAGGCGAAGTGAAGTCATCTGAAATTGAAGAAATAATACCAGCAACTCGTGTATTGAAGAAAAAGAAACTCAAGATTAATGTACACAGGCCACTTGGGACTAGGGTTGTATTTGACGATGAAGGCCACACACTTCCTCCACTAGCCAGGATAGCTGACACACAAAGTGGCAAAGAAATGTTGCTTGATCCAGAACAAAAAGCTGAATACTATAGAAGGATGCGAGATGATTTGAAGAAGGCTGACAAGGAAGACAAACTTATAGAACGTCAGCGGCTTAGAGAAAAAAGAATCAAGCAGAAGATGAAATGGAAGGCTGGGAATGCGGAAGAGGACGACCAAGATGATATATCTGGGTCAGAAGGAGATGAAACTGTTGATAGACTGCATAAAAAGAGTAAAGTATACTTTGATAGTGACTCTGACGAGGGTGAAAGAAATGAAGTCACAGGAAATGCACGTACAAGTACTGGCGGGGTTACTTTGGAGGAGCAAGAAGCTCTGGCTTTGAAATTGTTAAATTCCATGCACTCATAG 2241 0.407 MRRPKSREFRKQQRVSEEEEINLLNSWIQFQPPDSGSNPMSLPPLPKNSPVGRLDDDDTYSRYAGASRFEQFPLSKKTKDALRESKFVVMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAAQLFDVLKVVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTSTPTLLKQIVMIVPLEQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLLPSEIQMLEKLKAAKVPVHFNKPRKELLQPVSSLLASLLVKYPDMQHRAQRAFITYLRSIHIQKDKDIFDVMKLPIDEYSASLGLPMTPKIRFLNQKIKSKDVSTKSILVEPEDSDKETIFEVSRKKLDTVAFKDEETENDLLQLADTANEGEVKSSEIEEIIPATRVLKKKKLKINVHRPLGTRVVFDDEGHTLPPLARIADTQSGKEMLLDPEQKAEYYRRMRDDLKKADKEDKLIERQRLREKRIKQKMKWKAGNAEEDDQDDISGSEGDETVDRLHKKSKVYFDSDSDEGERNEVTGNARTSTGGVTLEEQEALALKLLNSMHS 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02727 746 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 58 527 - -
Gma02g02727 746 Pfam DEAD/DEAH box helicase 91 261 IPR011545 GO:0003676|GO:0005524
Gma02g02727 746 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 219 227 IPR000629 -
Gma02g02727 746 Gene3D - 51 279 IPR027417 -
Gma02g02727 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 457 IPR001650 -
Gma02g02727 746 MobiDBLite consensus disorder prediction 667 730 - -
Gma02g02727 746 SMART DUF4217_3 448 511 IPR025313 -
Gma02g02727 746 SMART helicmild6 326 409 IPR001650 -
Gma02g02727 746 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724
Gma02g02727 746 CDD DEADc_DDX10 78 276 - -
Gma02g02727 746 CDD SF2_C_DEAD 287 418 - -
Gma02g02727 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Gma02g02727 746 MobiDBLite consensus disorder prediction 689 717 - -
Gma02g02727 746 PANTHER RNA HELICASE 58 527 - -
Gma02g02727 746 Pfam Domain of unknown function (DUF4217) 452 509 IPR025313 -
Gma02g02727 746 SMART ultradead3 86 290 IPR014001 -
Gma02g02727 746 Pfam Helicase conserved C-terminal domain 299 408 IPR001650 -
Gma02g02727 746 Gene3D - 285 528 IPR027417 -
Gma02g02727 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 428 IPR027417 -
Gma02g02727 746 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02727 Gma-Chr2 52983852 52988408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02727 94 430 Eukaryotic Initiation Factors Gene Family AT3G19760 30.409 6.87e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02727 K14776 - gmx:100792106 1457.2