Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02649 ATGAACAACAGTATTCCTGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAAAGAAAGCTCATAGGGTTTGTGCCGGACCAAGAACTTGTAGAGCTCCTATGGAAAAATGGGCAAGTAGTTATGCACAACCAAACACATAGGAAGACACTTGGGAATTCATCTAACTTGAGACAGGTGCAGAAAAGTGATCAATCAGTATTAAGGTCTAGCGGTCCCTATGGAAACTCAAGCAACTTGGATCAAGAAGATGCCGCCCCATGGGTCCAATTCCCACTTGAGGACCCATTGGAACAAGATTTTTGTTCAAACCTTTTATCTGAACTACCAACTTGTGAATTTGAATCTTACAAGCCAATCAGGCAATTGGAAGAGGAAAAGTTTGCCAAATTTTTTGCTTCTGGTACCCCCCATCATCCTACTACTTCAAGTTCACAACCACTACCACCAAACATGAAACCCTCATGTATTCAGGGACTCCAAGGGAATCCTATTCCTATGCCAGCTCCAAGATTTCATGGTCCTGATTCATCTCAGAAAATCAATGACTTTGGAGCATCACGAAAGGTTCTAAATTTTCCTCAGTTTTCAACACCCCGTAATAATGTTCCTTCAGCACCTGGTATTACACAGTTTAGGGAGAAAACTACTGCTAACATGTCACAAAGTGAGGCTAGAGAGTACTCAGTGATCACAGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCGTCAGGAGCAAGATGTAAGCAGGGTTTCAAGCAGTGGTGTTTGGGCCACTACTAATAATAATACTACTTTATCTGCTGAGCCTGAAGCTGTCAGAGATTGTGTCCAAAGACCGATTTGTCCTAAGAGTGACCAACGAAAATCAGAGATGATTGAACTAACTGTGACTTCATCTTCCGGTGGCTCGGGAAGTACTGGTATCGGAAGAACTTGTTCCCTATCAACAAGAGATCATGGCCAAAAGAGAAAAGGGACAGAAGAAGAAGCGTTAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCTGATGGAAACAAGGCTTCTCAGCGGACGAGGTCTTCCAGAAggaaccgtgcagcagaagtgcataatcaatcagaaaggAGAAGAAGAGATAGGATCAACGAGAAGATGAGGACATTGCAGCAACTGATACCTAATAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTTCAGCTTCAGGTTATGTGGATGGGGGGTGGCATGACACCAGTGATGTTCCCAGGAATTCAGCACTATATGTCACAAATGGGTATGGGAATGGGTGCACCTTCTTTGCCTTCCATTCACAACCCGATGCAATTGCCAAAAGTGCCACATGATCAAGCCATGTCTGTGCTTCAGATACCAAACCAGAATTTAATGTGTCAAAATCCAGTTTTGGGTGCCTTTAACTACCAAAACCAGATGCAGAACCCGTGCCTTCCAGAACAATATGCACGTTACATGGGTTACCATCTTATGCAAAATGCCTCTCAGCCTATGAATGTGTTCAGATATGGTTCCCAGGCAGTGCAACACAGTCAAACGATGATTGCACCAGGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATATTGATGATGCTGACACTGGCAAAGCGGGTTCTTCCACCTTTAATTGA 1695 0.4254 MNNSIPGWDFESDTCLTNQRKLIGFVPDQELVELLWKNGQVVMHNQTHRKTLGNSSNLRQVQKSDQSVLRSSGPYGNSSNLDQEDAAPWVQFPLEDPLEQDFCSNLLSELPTCEFESYKPIRQLEEEKFAKFFASGTPHHPTTSSSQPLPPNMKPSCIQGLQGNPIPMPAPRFHGPDSSQKINDFGASRKVLNFPQFSTPRNNVPSAPGITQFREKTTANMSQSEAREYSVITVGSSHCGSNHIRQEQDVSRVSSSGVWATTNNNTTLSAEPEAVRDCVQRPICPKSDQRKSEMIELTVTSSSGGSGSTGIGRTCSLSTRDHGQKRKGTEEEALEEQSEATELKSADGNKASQRTRSSRRNRAAEVHNQSERRRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMWMGGGMTPVMFPGIQHYMSQMGMGMGAPSLPSIHNPMQLPKVPHDQAMSVLQIPNQNLMCQNPVLGAFNYQNQMQNPCLPEQYARYMGYHLMQNASQPMNVFRYGSQAVQHSQTMIAPGNNSSGPMSGTANIDDADTGKAGSSTFN 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02649 564 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 411 IPR011598 GO:0046983
Gma02g02649 564 Gene3D - 357 418 IPR036638 GO:0046983
Gma02g02649 564 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 359 423 IPR036638 GO:0046983
Gma02g02649 564 MobiDBLite consensus disorder prediction 358 379 - -
Gma02g02649 564 MobiDBLite consensus disorder prediction 319 343 - -
Gma02g02649 564 MobiDBLite consensus disorder prediction 533 564 - -
Gma02g02649 564 Pfam Helix-loop-helix DNA-binding domain 366 412 IPR011598 GO:0046983
Gma02g02649 564 MobiDBLite consensus disorder prediction 298 318 - -
Gma02g02649 564 CDD bHLH_AtPIF_like 362 425 - -
Gma02g02649 564 SMART finulus 368 417 IPR011598 GO:0046983
Gma02g02649 564 MobiDBLite consensus disorder prediction 53 83 - -
Gma02g02649 564 MobiDBLite consensus disorder prediction 298 379 - -
Gma02g02649 564 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 540 IPR031066 -
Gma02g02649 564 Coils Coil 368 388 - -
Gma02g02649 564 PANTHER TRANSCRIPTION FACTOR PIF5 1 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02649 Gma-Chr2 52401892 52405732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02649 217 531 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 38.532 1.96e-40 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g02649 HLH 6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02649 K16189 - gmx:100811777 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00281 14 2399750 2405099 Gma02g02649 02 52401892 52405732 GST