Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02639 GTGGAAAGAATAATTGCAGATAGGATCAGCAACGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACCTGGGAAAAGGACATTGATATTGCTTTTGCTCAACATGCTATTGATGAGTACAAGGCTCGTGAGGCTGCTATGGCAGTTCAAGGAAAGATGGTAGATTCTCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGAAACAACCTGAATGGTTGAAGGGTGGAGAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCATTGTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTAGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTTATAATGAGAAAAAACCTGGGAAGCCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAGTTTTGAAGGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAATTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAATTGCTTATCACTGGCACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCTTTGCTTCATTTCCTTGATCCGGACAAGTTCAGGAGCAAGGATGAATTTGTTCAGAACTATAAGAATCTGAGTTCTTTTAATGAGAATGAGCTTGCAAATCTGCATATGGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAACGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTTTAAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGAAGTAGTGACAACAGTAAACTAGAGAGAATTGTTTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAAATTGCATGAAACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGGAGAGTATATGTCACTTCGAGGGTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTTCGACAACAAGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTCTGGGTATCAATCTTGCTACAGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGACAACAAGAAGTTGTTAACATTTATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAAATGGTTCTGGACCACTTGGTGATTCAAAAGCTAAATGCAGAGGGTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTCGGAGCAGAGGAGCTTTTTAAAGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTGTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAACTGACGGGGAACAAGGAAATGAGTTATTAGGTGCTTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGAAGTTTCTGGAGCCGTTGGATAAAGCCTGATGCTGTATTCCAAGCAGAGGAAGCTCTTGCTCCTCGATCGGCTAGAAATATTAAAAGCTATGCAGAGGTTGATCCATCTGAAAGAAGTAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAGCAAGTTCCAAAACGCCGGAAAGCAGAGTATTCTGCTCCTGCAGTACCAATGATTGAGGGAGCATCTGTCCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAGAGACGCTCTTCGTTTTTCTCGTTCAGTTTTGAAATATGGCAATGAGAGCCAAATCGACTTAATTGCTGCTGAGGTTGGTGGTGCTGTTGGGGCAGCTCCACCTGGAGCACAGATTGAACTTTTCAATGCTCTTGTTGATGGTTGTACAGAAGCAGTAGAACTTGGAAATCTAGATGCAAAGGGGCCTTTGCTGGATTTTTTTGGTGTACCAGTGAAGGCAAATGATCTACTTACCCGTGTCCAACAACTTCAGCTTTTGGCAAAGCGCATTGGTCGATATGAAGATCCTGTCGCACAATTTCGCGTTCTGTCATATCTCAAACCATCGAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTACTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTGGATGAAAGACTTGGCCTTATGAAAAAAATTGCTCCTGTAGAACTTCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAAAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGTGAAAAATGCCAACAGCAGAGTTGGACGGAAGCCTTCCAAGAAAGAGAGAGAAAATATGATTAATTTATCACTGTTACGTGGGCAGGAGAAAAAGAAAAAATCGAGTTCTGTTAATGTCCAAATGAGAAAGGATAGATTTCAGAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAATGAGGAAGTATATGAGCAGTTTAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCGAAAATACGCAACTATTTACAACTTCTTGGGAGAAGGATAGATCAAATTGTGTTAGAACATGAACAGGAACCCTATAAGCAAGATAGAATGACCGTGCGACTGTGGAAATATGTCTCCACTTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGAGGTTGGCCCCTCTCACACAAATGGATCGGTATCTGTTTCATTTAGCAGAAATGGAAATCCATTCCGTTTCCATATGGAGAGGCAAAGAGGATTAAAAAATATGGCTACCTATCAAATGCCAGAACCAGTTGATAATACTGGGAAATCCGAGGCATGGAAACGAAGAAGAAGAACTGAAAGTGACAATCACTTCCAGGGTCAGCCACCACCTCAAAGGACCGTTAGTAATGGAGTCCGGATTGCTGATCCTAACTCACTCGGGATCCTAGGTGCTGGGCCGTCGGACAAACGCTTTGCTAGTGAGAAACCTTATAGGACACAACCTGGTGGTTTTCCTTCAAGACAAGGCTTCTCTTCAGGTATAAAGTAA 3672 0.406 VERIIADRISNDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMAVQGKMVDSQRKKSKASLRKLEKQPEWLKGGELRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNEKKPGKPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVKLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKETDGEQGNELLGAFKVANFCNDEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEVDPSERSNKRKKKEPEPPEQVPKRRKAEYSAPAVPMIEGASVQVRNWSYGNLSKRDALRFSRSVLKYGNESQIDLIAAEVGGAVGAAPPGAQIELFNALVDGCTEAVELGNLDAKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIGRYEDPVAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSRVGRKPSKKERENMINLSLLRGQEKKKKSSSVNVQMRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEQEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAEVGPSHTNGSVSVSFSRNGNPFRFHMERQRGLKNMATYQMPEPVDNTGKSEAWKRRRRTESDNHFQGQPPPQRTVSNGVRIADPNSLGILGAGPSDKRFASEKPYRTQPGGFPSRQGFSSGIK 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02639 1223 Pfam SNF2-related domain 110 379 IPR000330 GO:0005524|GO:0140658
Gma02g02639 1223 MobiDBLite consensus disorder prediction 1164 1181 - -
Gma02g02639 1223 Gene3D - 818 932 - -
Gma02g02639 1223 Gene3D - 82 321 IPR038718 -
Gma02g02639 1223 SMART chromo_7 2 56 IPR000953 -
Gma02g02639 1223 Pfam Chromo (CHRromatin Organisation MOdifier) domain 1 54 IPR023780 -
Gma02g02639 1223 MobiDBLite consensus disorder prediction 682 709 - -
Gma02g02639 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 312 IPR027417 -
Gma02g02639 1223 MobiDBLite consensus disorder prediction 1102 1116 - -
Gma02g02639 1223 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 1125 - -
Gma02g02639 1223 SUPERFAMILY Chromo domain-like 1 54 IPR016197 -
Gma02g02639 1223 MobiDBLite consensus disorder prediction 677 712 - -
Gma02g02639 1223 MobiDBLite consensus disorder prediction 1097 1116 - -
Gma02g02639 1223 SMART helicmild6 437 521 IPR001650 -
Gma02g02639 1223 Coils Coil 551 571 - -
Gma02g02639 1223 MobiDBLite consensus disorder prediction 1140 1223 - -
Gma02g02639 1223 MobiDBLite consensus disorder prediction 1148 1163 - -
Gma02g02639 1223 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 1 1125 - -
Gma02g02639 1223 SMART ultradead3 87 287 IPR014001 -
Gma02g02639 1223 Coils Coil 605 625 - -
Gma02g02639 1223 CDD CD2_tandem 1 53 - -
Gma02g02639 1223 ProSiteProfiles Chromo and chromo shadow domain profile. 1 63 IPR000953 -
Gma02g02639 1223 Pfam Domain of unknown function (DUF4208) 1000 1092 IPR025260 -
Gma02g02639 1223 Gene3D - 322 552 IPR027417 -
Gma02g02639 1223 Pfam Helicase conserved C-terminal domain 408 521 IPR001650 -
Gma02g02639 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 411 562 IPR001650 -
Gma02g02639 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 597 IPR027417 -
Gma02g02639 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 275 IPR014001 -
Gma02g02639 1223 CDD SF2_C_SNF 397 532 - -
Gma02g02639 1223 Gene3D - 1 54 - -
Gma02g02639 1223 SMART DUF4208_2 988 1093 IPR025260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02639 Gma-Chr2 52284160 52299854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02639 113 548 RAD5 or RAD16-like Gene Family AT1G02670 25.794 1.74e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma02g02639 SNF2_N 5.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02639 K11367 - gmx:100808039 2385.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02639 02 52284160 52299854 Gma02g02639 02 52284160 52299854 ECH
Gma14g00293 14 2510740 2529369 Gma02g02639 02 52284160 52299854 GST