Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02613 ATGGCGGCGATAAGTCTCCGGAAGGGGAACACGCGGCTTCCGCCGGAGGTGAACCGCGTGCTGTACGTTCGGAACCTTCCCTTCAACATCACCAGCGAGGAGATGTACGACATCTTTGGCAAATACGGCGCCATTCGCCAGATCCGCATCGGCACCAACAAGGACACTCGCGGAACCGCTTTCGTCGTCTACGAGGACATCTACGACGCCAAAACCGCCGTCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTTCTCTATTATCAACAAGCGAAGATGAGCAAGAAGTTCGATCAGAAGAAGAAGGAGGACGAGATCGCGCGCATGCAGGAGAAGTACGGCGTCTCCACCAAAGATAAGTAA 375 0.5573 MAAISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02613 124 SMART rrm1_1 20 90 IPR000504 GO:0003723
Gma02g02613 124 SUPERFAMILY RNA-binding domain, RBD 7 102 IPR035979 GO:0003676
Gma02g02613 124 Gene3D - 15 120 IPR012677 -
Gma02g02613 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Gma02g02613 124 CDD RRM_SF3B14 17 93 IPR034150 -
Gma02g02613 124 PANTHER SPLICING FACTOR 3B SUBUNIT 6 5 116 - -
Gma02g02613 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
Gma02g02613 124 PANTHER SPLICING FACTOR 3B 5 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02613 Gma-Chr2 52073848 52074677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02613 21 109 Eukaryotic Initiation Factors Gene Family AT2G36660 31.868 5.76e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02613 K12833 - gmx:100802877 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02613 02 52073848 52074677 Gma02g02613 02 52073848 52074677 ECH
Gma14g00313 14 2743222 2744178 Gma02g02613 02 52073848 52074677 GST