Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02592 ATGAGACTTTTCCCTCAATGGAACAAACCTCAGAAGCAGAAAAAGGTCTTCTCTCTTTCTCTCTCCTTTTCCCTCAAGCTCAGAATCTCCCGAATCTTGTTAAAAAGAAGAAGGATGTCAAGCGGAGCAACACACTGGTGTCATGCATGCAGACAGCCAGTTGTGCTTGATGGGAGAGATGCTGTTTGCCCTTACTGCGATGGAGGATTTGTACAAGAACTTGATGAGTTGGAAGGAATTGCACCCCACCATACCTTTTGCTCACAATCAGGAGAGTTCCATCAAATGCCTGACATTTTCGATGCTATACCTGCTTTTATGGGACAGAGGGGTTCTGACCAGAGATCCAGGCTTATGGATGATGCTGTTGATAATTTCATGAGGCATAGAACGGCTGGAAGAAACTCAAACTTTGATGTTAGAGGGAGATCTGGCTCTCGCCCAGTTCCTGAACGGAGTTGGGGCGTTTTTAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCCGGATCCACCTTCGCTGCTGGCAGCCCAAGAGGTGGTTCTAGGCATGTTGATTTTGGTGACTACTTTATGGGTCTTGGACTGGAAGAACTTATTGAGCAACTCACCATGAATGATCGGCGTGGTCCACCCCCGGCCGCACTATCTTCAATTGATGCAATGCCTACTATTAAGATAACACAGGCGCATCTTCGCTTGGATTCACACTGTCCAGTTTGTAAAGAAAAATTTGAATTGGGCACTGAAGCCAGAGAAATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACAGGCTAGTTCCCGGGGTACTCAAAATTGGGGAGGAAGGAATGACAGCAACACCAGCAGCAGTGGCAGCAATGATAGCTCCAGGGGTAGAGAGAACAGCCGTCAGAACCATGGAAGGAGAAATCCATCATCTTTTTTGTGGCCATTCCGCTCATCTAACTCAAACAATAATCATCATTCTGATACTGGGGGAAGCAGCTCTTCAAACCACTCCTGA 1077 0.4633 MRLFPQWNKPQKQKKVFSLSLSFSLKLRISRILLKRRRMSSGATHWCHACRQPVVLDGRDAVCPYCDGGFVQELDELEGIAPHHTFCSQSGEFHQMPDIFDAIPAFMGQRGSDQRSRLMDDAVDNFMRHRTAGRNSNFDVRGRSGSRPVPERSWGVFSSGPYLIFHGQVPGSTFAAGSPRGGSRHVDFGDYFMGLGLEELIEQLTMNDRRGPPPAALSSIDAMPTIKITQAHLRLDSHCPVCKEKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQASSRGTQNWGGRNDSNTSSSGSNDSSRGRENSRQNHGRRNPSSFLWPFRSSNSNNNHHSDTGGSSSSNHS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02592 358 MobiDBLite consensus disorder prediction 325 358 - -
Gma02g02592 358 Pfam Ring finger domain 238 280 IPR001841 -
Gma02g02592 358 SMART ring_2 239 279 IPR001841 -
Gma02g02592 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 286 IPR013083 -
Gma02g02592 358 CDD RING-H2_RNF126_like 239 280 - -
Gma02g02592 358 MobiDBLite consensus disorder prediction 286 358 - -
Gma02g02592 358 Pfam zinc-ribbon 44 74 IPR039525 GO:0061630
Gma02g02592 358 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Gma02g02592 358 SUPERFAMILY RING/U-box 220 286 - -
Gma02g02592 358 PANTHER OS03G0351800 PROTEIN 39 356 - -
Gma02g02592 358 MobiDBLite consensus disorder prediction 287 316 - -
Gma02g02592 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 39 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02592 Gma-Chr2 51916053 51918376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02592 186 296 C3H Transcription Factor Family AT5G01980 43.363 3.27e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02592 K11982 - gmx:100813674 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00335 14 3014005 3014714 Gma02g02592 02 51916053 51918376 GST
Gma20g00463 20 8956505 8957431 Gma02g02592 02 51916053 51918376 PCT
Gma02g02592 02 51916053 51918376 Gma20g00463 20 8956505 8957431 PCT